Populus trichocarpa (black cottonwood): 18108587
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Entry
18108587 CDS
T01077
Name
(RefSeq) eukaryotic translation initiation factor 5B
KO
K03243
translation initiation factor 5B
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pop03012
]
18108587
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
eIF-5
18108587
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
IF-2
GTP_EFTU_D4
GTP_EFTU_D2
MMR_HSR1
SprT-like
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
18108587
NCBI-ProteinID:
XP_006371591
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All DBs
Position
19:complement(13926483..13932596)
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AA seq
1225 aa
AA seq
DB search
MAGKKASGRDDENAAVGGGGKSRKKGLVIGNDDQYSIGTELSEKKGNYEGEEGEDEQVPE
VVLVSGKKKLKGRKSGAGGNTGFNWSNFGLLGGGDEDDNDGDDEEISKLTGEKDSDQEEE
DEPVVSFKGKKKGKGNKKSGGGGGSVFSASGFDATDDGENDGEVMDKDGDDDDDVPVIEF
TGQKKKSSKGGKKVAGRFSSKSNKKSGNNKFSAALLDEKSEDQVEETLKHEKKKKNKSAR
DAQEEDDLNKILAELGDAPPTSKSLAPPPQEEKPNLQPEPVSVPDSVAEKEGEDEKEESA
GAKKRKKKKKEKEKEKKAAAKEERLEEEKAETSEPKKTDAKGKGSEKKLPKHVREMQEAL
ARRKEMEERKAREEEDKRRKEEEERLRQEELERQAEEARRRKKEREKERLLKKKQEGKLL
TGKQKEEQRRLESMRYQILANATITVPNAERDGGPTRRPRYQTRRSRPVHDQANGIRIEE
PVEAKEKEQEEEEVVHEVESLELENFEPVEEEKTEVANVLVEDGMEEDDDDEEWDAKSWD
DVNLNVKGAYDDDEDSEPEPVLKKETKAPLAAAQPAIAVRKPVTSQPMDSHDVEDKKSQA
GVEVSDKNRKKDAAAKSKGAVSDAIPHKGEETLRSPICCVMGHVDTGKTKLLDYIRGTHV
QEGEARGITQQIGATFFPVENIRDRTKELKADARLNVPGLLVIDTPGHEAFTNLRSHGSG
LCDIAILVVNIMHGLEPQTIESLNLLRKRNTEFIVALNKIDRLYGWKTQPNAPIRKALKQ
QSKDVQNEFDRRLIEVITQLKEQGLNTELYYKNKDMGETFNIVPTSAISGEGIPDLLLLL
IQWSQKTMVEKLTFRNEVQCTVLEVKVTKGHGTTIDVVLVNGVLHEGDQIVFCSLQGPIV
TTIRALLTPHPMQELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLYVVRRDDDLEE
VKESAMQDMKSVTSRIDRSGEGVCVQASSLGSLEALLDFLKSLEPSIPVSGIGIGPVHKK
DVIKASVMLEKKKEYANILAFGVEVTPEARELADKLGVKIFKEDTIYCFSKEFKAYIQNL
KEERKREAAGEAIFPCVLEIIPECIFNKKAPIVLGVDVLEGILKVGTPVCVLQKDFTDIG
RIASIRFNEKAVDHARKGQKVTIKIVGTNPEEQQKMHGRHFDNDDQLVSHITRRSIDVLK
AYYRDDLSMEDWKLVLKLKTLFKIQ
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaagaaggcatccgggcgtgatgatgagaacgcggctgtgggtggtggaggg
aagtcaaggaagaaggggttggtgattggtaatgatgatcagtattcgattggtactgag
ttgtcggagaagaaggggaattatgagggagaggaaggggaggatgagcaggtgccggaa
gttgtgcttgtttctgggaaaaagaagttgaaagggaggaagagtggtgctggtgggaat
actggttttaattggtcgaattttgggttattgggaggtggtgatgaggatgataatgat
ggtgatgatgaggagatatccaagttgactggtgagaaagatagtgatcaggaggaggag
gatgagccggttgtgagttttaaagggaagaaaaagggtaagggcaataagaagagtggt
ggtggtggtggtagtgtgtttagtgcttcgggatttgatgctaccgatgatggtgagaat
gatggagaggtgatggataaagatggggatgacgacgatgacgtgcctgtcattgaattt
acggggcagaagaagaagtcgtcaaagggtggtaagaaggttgctgggagattttcatcc
aagtctaacaaaaagagtggtaataataagtttagtgcagcattgcttgatgagaagagt
gaagatcaggtggaagaaactttgaagcatgagaagaagaagaagaataagagtgcaagg
gatgctcaagaagaggatgatttgaataagattcttgcggagcttggtgacgcgccacct
acttcaaaatccttggcaccacctccacaagaggagaaacccaatcttcagcctgaacct
gtttcagttccagattctgtggctgagaaggagggtgaagatgaaaaagaagagtctgct
ggtgcaaagaagaggaagaagaagaagaaagagaaggagaaagagaagaaggcagcagca
aaggaagaaagactggaagaagaaaaagctgaaacaagtgagccaaaaaagactgatgca
aagggtaaaggttctgagaagaagcttccaaaacatgttagagagatgcaagaggcactt
gctaggcgaaaagaaatggaggagagaaaggcgagggaggaagaggataagaggaggaag
gaagaagaggaaaggctaaggcaagaagaactcgagaggcaagcagaagaggctaggcgt
aggaagaaggaaagggaaaaggagagactcttgaagaagaaacaggaaggcaagcttcta
acagggaagcagaaggaagaacaacggcgactagagtctatgaggtatcaaatacttgct
aatgcaactattaccgtccctaatgcagaaagagatggtggacctacacgacgtcctagg
taccagactaggaggtcaagaccagtgcacgatcaagcaaatggtatcaggatagaggaa
cctgtagaagctaaggaaaaagagcaggaggaggaggaagtagtccacgaggtcgaatcc
ttagaattagagaattttgagccagtggaggaagagaaaacagaagttgctaatgtactt
gtggaggatggaatggaggaagatgatgatgatgaggagtgggatgcaaagagctgggat
gatgtaaatctcaatgttaagggtgcatatgatgatgatgaggattctgagcctgaacct
gtcttgaagaaggaaacaaaagcccctcttgcagctgcacagcctgcaattgctgtgaga
aaacctgttacatcacagccaatggactctcacgatgttgaagataagaaaagtcaggct
ggggtcgaagtttctgacaaaaacaggaagaaagatgctgctgcgaaaagtaaaggagca
gtttcagatgccatccctcataaaggtgaagagaccctgcgctcaccaatttgctgtgtt
atgggccatgtcgatactggcaaaaccaagctgctggattatattcgaggtacccatgtt
caggaaggggaggctcggggtatcacacaacagattggtgcaacattctttcctgttgag
aacatacgagacaggactaaggaattgaaagctgatgcaagattaaatgttcctggtctg
ctagttattgatacccctggccatgaagctttcaccaatctacggtcacacggttcaggt
ttatgcgacattgccattctggttgttaacataatgcatggcttggagccgcaaaccata
gaatcactcaatcttttgaggaagaggaacacggagttcattgttgcattaaataagatc
gacagactctatggatggaaaacacaacctaatgcacctattaggaaggcattgaagcag
cagtcaaaagatgtgcaaaatgaattcgacaggaggctcatagaggtcataacgcagttg
aaggagcaaggattaaacactgaattgtactataaaaacaaggacatgggagaaactttt
aacatcgtacctacaagtgcgattagtggagaaggcattcctgatttgttattactactg
atccaatggtctcagaaaactatggttgagaaactcacgttcagaaacgaagtgcagtgt
acggtattggaggtcaaggttactaaaggccatggaacaacaattgatgttgtgctggtt
aatggtgtgctccatgaaggcgatcaaattgtgttttgcagcttacagggtcccattgtt
actacaattcgagctctgctgacgcctcacccaatgcaggaactccgggttaaggggaca
tatctgcaccataaggaaatcaaggctgcacaaggtatcaagatcactggacagggcctt
gaacatgctattgctggaactagtctatatgtggtccggcgtgatgatgatttggaagag
gtcaaggaatctgcaatgcaagacatgaagtcagtcacgagtcggattgatagaagtggc
gagggagtttgtgtacaagcatcttcccttggctcactggaagcgttgcttgacttcttg
aagtccctggaaccaagcattcctgttagtggtataggcattggcccagtacataaaaag
gatgtcatcaaggccagtgtaatgcttgagaagaaaaaggagtatgccaacatattggca
tttggtgttgaagtgacacctgaggctcgggaacttgcagataaactaggagtgaagatt
ttcaaagaggataccatttattgcttttctaaagaattcaaggcttacattcagaatctg
aaggaggaaaggaagagggaagctgctggtgaagctattttcccttgtgttcttgagata
ataccagagtgcattttcaacaagaaagctccaatcgtcttgggggttgatgttcttgag
ggcatactcaaggttgggactccagtatgtgttctacaaaaagacttcactgacattggt
cggattgcttccattcggtttaacgagaaagcagtggatcatgcaaggaaaggccagaag
gtgaccataaagatcgtaggcaccaatccggaggagcagcaaaaaatgcatggcaggcat
ttcgacaatgatgatcaattagtcagccacattacaagaaggtcaatcgatgttcttaaa
gcttattatcgggatgatctgtctatggaagattggaagctggttcttaaattgaagacc
cttttcaagatacagtaa
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