Populus trichocarpa (black cottonwood): 18109444
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Entry
18109444 CDS
T01077
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18109444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18109444
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18109444
mRNA degradation factors
5'-3' decay
Decapping complex
18109444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
WH1
Motif
Other DBs
NCBI-GeneID:
18109444
NCBI-ProteinID:
XP_024458559
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Position
6:complement(21660081..21663352)
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AA seq
366 aa
AA seq
DB search
MSQTGKLMPNLDQQSTKMLNLTVLQRMDPFIEEILITAAHVTFYAFNIETNQWSRKDVEG
SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQAPYLLYRNQSQEVNGIWFYNR
RECEDVANLFTRILNAYSKVPAKPKVASGKSEYEELEAVPNMSVFEGPLEPSSTASAAND
STEDSSFENFFSTAMNIGSTASSVANSRQPYQPSPTIPLSSHTPSVVMPSPLVPQIPSLP
LSSLSTSKTIHGTPDPISSGSHVTNLVKPSFFAPLSSSSVLLPPPISSPLTSAPALQPPL
NLQRPYGTPMLQPFPPPTPPPSLTPSSTATTPLISRDKVRDALLMLIQDDQFIDMFHQAL
LKVHHP
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagacagggaaattgatgccaaatctggatcaacagagcactaagatgctcaat
ctcactgtactccagcgaatggatcctttcatcgaagagattttaatcacagctgcgcat
gtcactttttacgctttcaatattgaaaccaatcagtggagccgcaaggatgttgaagga
tctctctttgtagtcaagaggaatactcaaccgcggtttcagtttattgtaatgaaccgg
cgaaacacagaaaacttagtggagaatttattgggggattttgagtatgaagttcaagct
ccgtatttgttgtatcggaatcaatctcaagaagttaatggtatttggttttacaatcgg
cgtgaatgtgaggatgttgccaacctctttactaggatccttaatgcttactcaaaggtt
cctgcaaagccaaaagtagcttcaggcaaaagtgaatatgaggagcttgaagcagtccca
aatatgtcagtgtttgaaggtcccttggaaccatcatcaactgcctctgctgccaacgat
agcactgaagattcttcgtttgagaacttctttagtacagccatgaatattggaagtact
gcttctagtgtagcaaattcaagacagccatatcagccttctcccaccattccattatcc
tcccatacacctagtgttgttatgccctctccactagttccacaaataccttctcttcct
ctttcatctttatccacctcaaaaaccattcatggcactcctgatccaatcagcagtggc
agtcatgtcactaatcttgtgaagccctcattttttgcacccctttcttcctcatctgta
ttgctgccaccccctatctcctcgccacttaccagtgctcctgcacttcagcctccccta
aatctgcaacgaccatatggcactccaatgcttcaacccttcccacctcccacaccacca
ccatctcttactcctagttcaactgccactacacctcttattagcagggacaaagtccgt
gatgcacttctgatgcttattcaggatgatcaattcattgacatgtttcatcaagcactg
ctgaaggtgcaccatccatga
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