Populus trichocarpa (black cottonwood): 18110817
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Entry
18110817 CDS
T01077
Name
(RefSeq) TMV resistance protein N
Organism
pop
Populus trichocarpa (black cottonwood)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TIR
NB-ARC
TIR_2
C-JID
LRR_4
LRR_8
LRR_3
AAA_16
LRR_1
AAA_18
ATPase_2
AAA_22
DUF3388
DUF530
Motif
Other DBs
NCBI-GeneID:
18110817
NCBI-ProteinID:
XP_024439350
LinkDB
All DBs
Position
13:10189525..10201398
Genome browser
AA seq
1386 aa
AA seq
DB search
MASTSVKGITSSSSSSSPPPLYMHDVFLSFRGKDTRDNFTSHLYSNLKQRGIDVYMDDRE
LERGKTIEPALWKAIEESRFSVIIFSKDYASSPWCLDELVKIVQCMKEMGQSVLPVFYDV
DPSEVAEQKGQYERAFVEHEQNFKENLEKVRNWKDCLSMVANLSGWDIRNRNESESIKII
VEYISYKLSVTLPTISKKLVGIDSRVDVLNGYIREEVCKAIFIGICGMGGIGKTTVARVV
YDRIRWQFEGSCFLANVREVFAEKDGRRRLQEQLLSEILMERASVWDSSRGIEMIKRRLR
LKKILLILDDVDDKEQLEFLAEEPGWFGPGSRIIITSRDKKVVTGNNNNRIYEAEKLNDD
DALMLFSQKAFKNDHPAEDFVELSKQVVGYANGLPLALEVIGSFLYDRSIPEWRGAINRM
NEIPDGRIIDVLRVSFDGLHESDKKIFLDIACFLKGFKIDRITRILQSRGFHAGIGIPVL
IERSLISVSRDQVWMHNLLQIMGKEIVRCESPEEPGRRSRLWTYEDVCLALMDNTGKEKI
EAIFFDMPGIKEAQWNMKAFSKMSRLRLLKIDNVQLSEGPENLSNKLLFLEWHSYPSKSL
PAGLQVDELVELHMANSNLDQLWYGCKSAFNLKVINLSNSLHLTKTPDFTGIPNLESLIL
EGCTSLSEVHPSLGYHKKLQYVNLMDCESVRILPSNLEMESLKVCILDGCSKLEKFPDIV
GNMNCLMVLRLDGTGIEELSSSIHHLIGLEVLSMKTCKNLKSIPSSIGCLKSLKKLDLFG
CSELENIPENLGKVESLEEFDVSGTSIRQPPASIFLLKNLKVLSFDGCKRIAESLTDQRL
PSLSGLCSLEVLDLCACNLREGALPEDIGCLSSLKSLDLSRNNFVSLPRSINQLSGLEML
ALEDCTMLESLPEVPSKVQTLNLNGCIRLKEIPNPTELSSSKRSEFICLNCWELYNHNGE
DSMGLTMLERYLEGLSNPRPGFGIAIPGNEIPGWFNHQSMGSSISVQVPSWSMGFVACVA
FSANGESPSLFCHFKANGRENYPSPMCISCNYIQVLSDHIWLFYLSFDHLKELKEWKHES
YSNIELSFHSFQPGVKVKNCGVCLLSSVYITPQPSSAHFIVTSKEAASSFRASLTFSSSD
HQWKATVFPEIADTSRRPLKSNLAQRFIVPVEMEPEKVMAIRSRLFKAIEESGLSVIIFA
RDCASLHWCFEELVKIVGFVDEMRSDTVFPVSCDVEQSKIDDQTESYTIVFDKNEENLRE
NEEKVQRWRNILNEVEISSGSKSLTIPKLQQLLQQHQQLQLLEHKLMLEEQQLQQQWQQT
WWRQQQLDEELLRQQQVLQPVLRQQQRRQQQLQRRQQQGLQQLQHLLQQQQLQQQLPWFW
SGINLL
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaccagcgtgaaaggaataacctcatcttcatcttcatcttctcctcctcca
ctatatatgcatgatgtgttccttagttttagaggcaaagacacccgggacaactttact
agtcatctatattctaatctgaaacagagaggcatcgatgtgtacatggatgatagggag
ctcgagagaggaaagaccatcgaacctgctctctggaaggccatcgaagaatcaaggttt
tctgtcattatattttcaaaagattacgcttcttcaccatggtgcttggatgaacttgtc
aagattgttcagtgcatgaaagagatggggcaaagtgttctgccagttttttatgatgtg
gatccctcagaggtagccgagcagaaagggcaatatgagagagccttcgttgagcatgaa
caaaatttcaaggaaaacttggagaaggtccggaactggaaagattgtctctctatggtg
gccaatctatctggctgggacatacggaataggaatgaatcggaatcaattaaaataatt
gttgaatacatatcgtacaaactaagcgtcactctgccaacaattagcaaaaaattagtt
ggaatagattctcgtgtagatgtattaaatggctatatacgtgaagaagtatgcaaagca
atcttcatagggatctgtggaatgggtggcataggtaagacgactgttgcacgggtagta
tatgataggattcgttggcaatttgaaggcagctgtttcttagcaaatgtcagagaagtt
tttgctgagaaagatggacgacgtcgtttgcaggaacaacttctttctgaaatcttaatg
gaacgtgcttctgtatgggattcttctagagggattgagatgataaagcggaggttacga
cttaaaaagattcttcttatccttgatgatgtagatgacaaagaacaactagaattcttg
gctgaggaacctggatggtttggtccagggagcagaattatcataactagcagagacaaa
aaagtggtaactggaaataataataatagaatttatgaggctgagaaattgaatgatgat
gatgctcttatgttatttagccagaaagctttcaaaaatgaccaccctgctgaagatttt
gtggaactatccaagcaagttgtgggttatgctaatggccttccactggctcttgaagtt
ataggttcatttttgtatgacagaagtatccctgaatggagaggtgcaattaatagaatg
aatgagattcctgacggcagaattattgatgtgcttcgtgttagttttgatggcctccat
gaatcagataagaagatatttttagacattgcatgtttcctgaaggggtttaaaattgat
cgaataacaaggatacttcaaagccgtggattccatgcaggtattggaataccagttctt
attgagagatctctcataagtgtctctcgggatcaagtttggatgcataatttattacag
ataatgggtaaggaaattgttcgttgtgaatcccctgaagagcctggaaggcgcagtaga
ttgtggacatacgaggatgtctgccttgcactgatggacaacacaggaaaagaaaaaata
gaagccatattctttgacatgcctggaataaaagaggcacaatggaacatgaaagccttc
tctaaaatgagcagactaagattgctcaaaatcgacaacgtgcagctttctgaaggacct
gaaaatctttccaataagttgctttttcttgaatggcattcttacccttcaaaatcattg
ccagctggtttacaggtggatgagctagttgaacttcacatggctaacagtaatcttgat
caattatggtatgggtgtaagagtgcttttaatttgaaagtcatcaatctcagcaactca
ctacacctgaccaagactccagattttactggaattccaaatctcgagagtctgattctt
gaaggttgtacaagtttgtctgaggtccatccatcactcggatatcacaagaagcttcaa
tatgtgaatcttatggattgcgaaagtgttaggattcttccaagcaaccttgaaatggaa
tcacttaaagtttgcattcttgatggatgctcaaaacttgagaagtttccagatatagta
ggaaacatgaactgtttgatggtgcttcgtttggatgggacaggtattgaagaactgtct
tcatcaattcatcatttgattggcttagaagtattgagcatgaaaacctgtaagaacctt
aaaagcattccgagtagcataggttgcttgaaatcccttaaaaaacttgatttgtttggc
tgctctgaacttgaaaatataccagagaatttggggaaagttgaaagtttggaggagttt
gatgtaagtggaacttcaataagacaaccgccagcatccatttttcttttaaagaatctt
aaagtattatcttttgatggatgcaaaagaatagctgagagtctcacggatcaaaggttg
ccttctttgtcgggtctgtgttctttagaagtactggatttatgtgcttgcaatctaaga
gaaggggcacttcctgaagatattggctgcttatcttcattgaagtctttagatctgagc
cggaataactttgttagtctgcctaggagcataaatcagctttctggacttgaaatgctt
gccttggaggattgcacgatgcttgaatcattgcctgaggttccatcaaaagttcaaaca
ttaaatttgaacggttgtatacgcctaaaagaaattccaaatccgacagagctaagcagt
tccaaaagatcagagttcatatgtcttaactgctgggaattgtacaatcataatggcgaa
gacagcatggggttgacgatgcttgaaagatacctcgagggtttgtctaatccaagacct
ggatttggtatcgctattccaggaaatgaaattccaggctggtttaaccatcaaagtatg
ggatcttcaattagtgtgcaagtgcctagttggagcatggggtttgttgcatgtgttgca
tttagtgcaaatggtgaaagtccttctcttttttgtcatttcaaagccaatggaagagag
aattatccttcgccgatgtgtattagttgtaactatatccaagttctgtcagatcatatt
tggctattctatctatcttttgatcatcttaaagagcttaaagaatggaagcatgaatcc
tatagcaacattgagttgtcatttcattctttccagcctggagtaaaggtgaagaactgt
ggtgtctgtttgttatcttctgtatatattacaccacaaccatcttctgcccattttatt
gttacaagcaaagaagcagcttcttcatttagagcttctttaactttttcttcgtcggac
catcaatggaaggccactgttttccctgagattgcagacactagtcgtagacctttaaag
tcaaatctagcccagagattcattgtcccagtcgagatggaaccagagaaagtaatggca
attagatcaagactctttaaggccattgaagaatcagggctgtcagttattatatttgca
agagattgtgcttctttacattggtgctttgaagaacttgtcaagattgtcggattcgtg
gatgagatgagatcggacactgtgtttccagtttcttgtgatgtcgaacaatcaaagata
gatgatcaaacagagagttacacaattgtctttgataagaatgaagaaaatctcagggaa
aacgaggagaaggtgcaaagatggaggaatattctcaatgaagttgaaatttcatctgga
tcgaaaagtttgactatacctaaactgcagcagctgctccagcagcaccagcagctgcag
ctgctcgagcataagctaatgctcgaggagcagcagctccagcagcagtggcagcagaca
tggtggcggcagcagcagctcgacgaggagctgctccggcagcagcaggtgctccagccg
gtgctgaggcagcagcagcggcggcagcagcagctccagcggcggcagcagcaggggcta
cagcagctgcagcacctgctccagcagcagcagctacagcagcagctcccttggttttgg
tcaggaattaacttgctttag
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