Populus trichocarpa (black cottonwood): 7455653
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Entry
7455653 CDS
T01077
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7455653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7455653
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
7455653
Complex C
U5 SnRNP specific factors
7455653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
Roc
Ras
Septin
TsaE
Motif
Other DBs
NCBI-GeneID:
7455653
NCBI-ProteinID:
XP_024458732
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All DBs
Position
6:19768838..19774409
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AA seq
988 aa
AA seq
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MDDNLYDEFGNYIGPEIESDRESDGEEEDEELPDKPHEDEEESDGEDAVHASNGWLAASD
DVDMDNQVVLAEDKKYYPTAEEVYGPGVETLVNDEDEQPLEQPIIKPVRNIKFEVGVKDS
STYVSSQFLVGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHMPTFDLNSEKHIRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQEQLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
ISAVSLTAGNVQVIDPAAGNVCFAGATAGWSFTLHSFARLYLKLHGIPFDADKFASSLWG
DMYYHPEDRAFKKKPPASGAERSFVQFVLEPLYKIYSQVIGEHKKSVESTLAEFGVTLPN
SAYKLNVRPLLRLACSQVFGSALGFTDMLVKHIPSARDAAARKVDHTYTGPKDSMIYHAM
VDCDPSGPLMVNVTKLYPKSDCSSFDAFGRVYSGKIMTGQSVKVLGEGYSPEDEEDMTVK
EVTKLWVYQARYRLPISMAPPGSWVLIEGVDASIMKTATLSNVNYNEEDIYIFRPLQFNT
LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDL
RELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIEDGV
VSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGAVKD
SIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMAT
PRLMEPVYYVEIQTPIDCLTAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFE
TDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMS
EDVSINKFFDEAMVVELAQQAADIFINK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggacgacaatttatatgatgagtttgggaactacattggtccggaaatagagtctgac
cgagagagtgatggagaggaagaagatgaagaactcccagacaagcctcatgaggatgag
gaggaatctgatggtgaggacgcagttcatgcttccaatgggtggcttgctgcttctgat
gatgttgatatggataaccaagttgttcttgctgaggacaagaagtactacccaactgcg
gaggaggtttatggtccaggtgttgaaacgttggttaatgatgaagacgagcagcctctt
gagcaaccaataattaagcctgttaggaacatcaagtttgaggttggggttaaggactct
tcaacttatgtttccagccagtttcttgttggtctcatgtcaaatccctctttggttcgt
aatgttgcccttgtgggccatctacaacatgggaagacagtttttatggacatgttggtt
gagcaaacgcatcatatgcccacttttgatttaaatagtgagaagcatataagatacaca
gatacaaggatcgatgagcaagaaagaaggatatctatcaaggcagttccaatgtcactc
gttcttgaggatagcaattcaaagtcgtacctctgtaacatcatggacacccctggtcat
gtcaacttctctgatgaaatgactgctgcactcaggctggctgatggtgccgtgttgatt
gtggatgcagctgaaggagtgatggtaaacacagagagggccatacgccacgcaattcag
gaacagctgcctattgttgttgtgatcaataaggttgacaggctcataacagagcttaaa
ttgcccccaaaggatgcttaccataagctaagacataccatagaagtcattaataaccat
atatctgctgtctctttgactgctggaaatgtccaagttatagatccagctgctggaaat
gtttgttttgctggtgcaaccgcaggatggtccttcactttgcattcctttgccagattg
tatctcaaactccatggtatcccatttgatgctgataagtttgcgtctagtctctggggc
gatatgtattatcatcctgaggacagggctttcaagaagaaacctcctgctagtggagca
gaaagatcgtttgttcaatttgtgctggaacctctttacaaaatatacagccaagtgatt
ggagaacataaaaaaagtgttgagtctactcttgctgagtttggcgttactcttcctaat
tcagcttataaattaaatgtcagacctttgctaagattggcttgcagccaagtttttggc
tcagccttaggcttcactgatatgcttgttaagcatataccttcggctagggatgctgct
gctagaaaggttgatcatacctatactgggcccaaagactcaatgatttaccatgccatg
gtagattgtgatccttctggccccttaatggttaatgtgaccaaactgtatcctaagtca
gattgcagttcctttgatgcttttggtagggtttatagtggtaaaattatgacagggcag
tctgtaaaagttttgggagaaggctattcaccagaggatgaggaggacatgacagtcaaa
gaagtgaccaaactatgggtatatcaagctcggtataggttacccataagcatggcacct
cctggttcctgggttctcattgaaggtgtggatgcttcaattatgaaaactgcaactctc
agtaatgtgaattataatgaagaagatatatacatatttcgacctcttcagttcaatact
ctcccagtagttaaaaccgccactgagcctctaaatccaagcgagttgcccaagatggtg
gagggtcttaggaagatcagtaaaagctatcctctggccataactaaagtcgaggagtct
ggggagcacactattcttggtactggagagttgtacttggattctattatgaaggacctt
agagagctctattctgaagtggaagtgaaggtagccgatcctgttgtctcattctgtgaa
acagtggtggagtcttcatcaatgaaatgctttgctgaaacacccaacaagaaaaataaa
ataaccatgatagctgagccattggaaaaagggcttgcagaagacattgaggatggtgtt
gtaagcattgactggaaccggaaggctctaggtgacttcttcaagacaaaatatgattgg
gatttgcttgcagcacgatccatatgggcttttggccctgataagcagggacctaacatt
ttgctagatgacacgcttcctactgaagtggacaagggattactgggtgccgtgaaggat
tctattgttcaagggtttcagtggggtgcacgagaaggaccactttgtgatgaaccaatc
agaaatgttaagttcaagatagttgatgctaggattgcgcctgaaccacttcatcgcgga
tctggtcaaataattccaacagctcggcgtgtggcctattcagcttttctcatggcaacc
ccaaggctcatggaaccagtatattatgtggagatacaaacaccaattgactgcctcact
gcaatttatacagtgttatctcgcagacgtgggcatgttacagccgatgttcctcagcct
gggactcctgcttatattgttaaggcatttttaccagtcatagaatcatttggttttgag
acggacttgaggtaccatacccaagggcaagcattttccctatcagtgtttgatcattgg
gctatagtccctggagatccccttgataagagcattgttctgaggccacttgagcctgca
ccaatccagcaccttgcccgtgaatttatggtgaagacaaggcgtcgcaagggaatgagt
gaagatgtgagcattaacaagttcttcgacgaagctatggtggttgagctggctcagcaa
gcagcagatatattcatcaacaaatga
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