Populus trichocarpa (black cottonwood): 7457880
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Entry
7457880 CDS
T01077
Name
(RefSeq) elongation factor 1-alpha isoform X2
KO
K03231
elongation factor 1-alpha
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7457880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7457880
03016 Transfer RNA biogenesis [BR:
pop03016
]
7457880
03012 Translation factors [BR:
pop03012
]
7457880
04131 Membrane trafficking [BR:
pop04131
]
7457880
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7457880
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
7457880
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
7457880
Translation factors [BR:
pop03012
]
Eukaryotic type
Elongation factors
7457880
Membrane trafficking [BR:
pop04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
7457880
Exosome [BR:
pop04147
]
Exosomal proteins
Proteins found in most exosomes
7457880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
AAA_22
Motif
Other DBs
NCBI-GeneID:
7457880
NCBI-ProteinID:
XP_002311107
UniProt:
A9PAR0
LinkDB
All DBs
Position
8:2407256..2417261
Genome browser
AA seq
449 aa
AA seq
DB search
MGKEKSHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
DKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKK
VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQIQEPKRPSDKPLRLPLQD
VYKIGGIGTVPVGRVETGVIKPGTVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNV
KNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTCHIAVKF
AEILTKIDRRSGKELEKEPKFLKNGDAGMIKMIPTKPMVVETFSEYPPLGRFAVRDMRQT
VAVGVIKNVEKKDASSAKVTKSAAKKGGK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagagaagtcgcacatcaacatcgtggtcattggccatgtcgactctggaaag
tcgaccaccactggtcacttgatctacaagcttggaggtattgacaagcgtgtcatcgag
aggttcgagaaggaagctgctgagatgaacaagaggtcattcaagtatgcttgggtgctt
gacaagctcaaggctgagcgtgaacgtggtattaccattgatattgctctgtggaagttc
gagaccaccaggtactactgcactgtcatcgatgctcctggacatcgtgactttataaag
aacatgattaccggaacctcccaggctgactgtgcagtcctcatcattgactctaccact
ggtggttttgaggctggtatctccaaggatggtcagacccgtgagcatgctcttcttgcc
ttcacccttggtgtaaagcaaatgatctgctgctgtaacaagatggatgccaccactcca
aaatactccaaggctaggtacgatgaaattatcaaggaagtgtcatcctatttgaagaaa
gtcggttacaacccagacaagattcccttcgtgcctatctctggatttgagggtgataac
atgattgagaggtccaccaacctggactggtacaagggaccaactctcctcgatgccctc
gaccagatccaggagcccaagaggccctcggacaagcccctccgtctcccccttcaggac
gtgtacaagattggtggtattggaacggtcccagttggtcgtgtggaaactggtgtcatc
aagcctggtacggttgtcactttcgggccaactggactaactactgaagttaagtctgtt
gagatgcaccacgaagcactccaagaggctcttcccggtgacaatgttggatttaacgtt
aagaatgtcgccgtgaaggatctgaagcgtggttttgttgcctcaaactcaaaggatgat
cccgccaaggaggctgcgaacttcacctcccaggtgatcatcatgaaccatcctgggcag
atcggaaatggttacgcccctgttcttgactgccacacctgtcacattgctgtcaaattt
gctgagatcctcaccaagattgacaggcgatcagggaaggagttggagaaggaacctaaa
tttctgaagaacggtgatgcaggtatgattaagatgattcccacgaagcccatggtggtg
gagactttctcagagtatcccccacttggacgttttgctgtgagggatatgcgccagact
gttgctgtgggagtgatcaagaacgtggagaaaaaggatgcttctagtgctaaggtgacc
aaatctgctgccaagaagggtggcaagtga
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integrated database retrieval system
