Populus trichocarpa (black cottonwood): 7458520
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Entry
7458520 CDS
T01077
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7458520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7458520
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7458520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
7458520
NCBI-ProteinID:
XP_002308799
UniProt:
B9HCV4
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Position
6:complement(997667..1001898)
Genome browser
AA seq
476 aa
AA seq
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MEMELGKLFIGGISWDTNEDRLKEYFRAFGEVLEAVIMKDRATGRARGFGFVVFADPAVA
ERVVMEKHLIDGRNVEAKKAVPREDQNTLNKNSSSVNGSPGPARTKKIFVGGLASTVTES
DFRKYFDQFGVITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR
AVPKELSPGPARNQLGGFNYSPSRVSSFLNGYTQGYNPSFVGGYGVRMDGRFSPVTAGRS
NFSPFGSGYGMGLNFEQVLNPVYGGNSNISSNAGYGRVSPSYSGNASRYSNPIGFSGGNG
GSSSVLNPIAHSLWGNGSINHASNTTNSSSFMSSGTGSSGMGSFSSMGALWGSSANSEQG
GGVRAVNSSNLSFGGGDFDIGLEGVGYGRNSRTGVAPASSHAASNGGYDGAYADFYEKGS
LYGDNTWQSSPSELDVSGSFGFGLGNATSDVMTKNSAGYVGGYSVANRQSNRGIAA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagcttggaaagttgttcattggtgggatttcatgggacacgaacgaagac
cgtcttaaggagtatttccgggcttttggggaagttttagaagctgtcataatgaaggat
cgggccacgggtcgtgctcgaggatttggttttgttgttttcgcagaccctgctgttgct
gagagagttgtgatggaaaagcaccttatagatggtagaaatgttgaggcaaagaaggca
gttcctagagaggatcagaacaccctgaacaaaaacagtagcagcgttaatggttcacct
ggccctgcccgaacaaagaagatatttgtaggaggtttagcatctacagttacagagagt
gactttaggaagtactttgatcagtttggggtgattacagatgtggtggtcatgtatgat
cacaacactcaaaggccaagaggttttggattcatcacctacgattcagaggaagcagtg
gatagagtattgcacaaaacctttcatgaactcaacggtaaaatggttgaggtcaagcgg
gctgtccccaaagagttatctccaggaccagctaggaaccagttaggggggtttaactat
agtcctagtagagtcagtagcttcctcaatggttacactcagggatacaatccaagtttt
gttggagggtatggcgttagaatggatggcaggtttagtcctgttactgctgggcggagt
aacttttctccatttggtagtggttatgggatgggattgaattttgagcaggtgttgaac
ccagtttatgggggaaattcaaacatcagttctaatgctggctatggacgagtaagtcct
tcatatagtggaaatgcaagcaggtacagcaaccccattggatttagtggaggcaatgga
ggaagtagttctgtcttaaatccaattgcccactctttatggggaaatggaagtattaat
catgcttctaacaccacaaactccagttcttttatgagttctggaactgggagctcagga
atgggttcttttagcagtatgggagcactttggggttcctctgctaattctgaacaaggt
ggaggagttcgcgcagtcaatagcagtaatcttagctttggtggtggagattttgatatt
ggtctagaaggggtagggtatggaaggaacagtaggacaggtgttgcaccagcatcatct
catgctgcatctaatggtggttatgatggggcttatgcagacttttatgagaagggctca
ttatacggggataatacctggcaatcttcaccttcggaactggatgtgtctggctcattt
ggttttgggcttggaaatgcaacttctgatgttatgactaaaaattctgctggttatgtt
ggtggctatagtgttgctaatagacaatcaaatagaggaattgctgcatag
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