Populus trichocarpa (black cottonwood): 7461338
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Entry
7461338 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP214 isoform X5
KO
K14317
nuclear pore complex protein Nup214
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7461338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7461338
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7461338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
7461338
NCBI-ProteinID:
XP_002303977
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Position
3:complement(21630734..21641520)
Genome browser
AA seq
1785 aa
AA seq
DB search
MGFGKEGETKTEFEEEKEGDHVESSDYYFDKIGKPIPILSDQTVSPFPLQNPPLPSRPLA
LSQSRSLIFLAHPSGFLVARTKDVMDAAMDIKEKGSSSSSSIQHVSLVDVPIGKVHILTL
STDSSTLAVSVAAHIHFFHVHSLLDKEQKPSFSCSLSEPSSSTVKDIQWRRRPDNSYLVL
SNQGKLYHGALAAVTHTLKHITDNVDAVEWSLKGKYIAVARGSLISILSSNFKERFSISL
PFRSWIADSDDNCTVKVDSIRWVRHDSIIVGCFQQTADGKEENYFLQVISRKDGKIYDSS
SKPVVLSFYDLFSGLVDDIVPYGSGPYLSLDYLEQCGLAITANKKNTDQHIVLLGWSVED
EMSETAVIDIERDTWLPRIELQENGDDNLIMGLCVDRVSLYGKVKVEVGVEEQKELSPYC
VLMCVTLEGKLVMFQVASATGANIQPEVDSSLEDEEEDIALEPEGCDQSNLSSGLHEETL
EEISLGLQPQHASNKELQLNKDGGIPTQKDLVPSVKNEIPEKLEIKSLSVQQSAKLGQSS
LKASFPEIPREVGSNALPGVPSQSWASGKVTLSASTLIQGNRPDYNNVQVGAANVPSDLG
SKSFCMKDTAGQSTSFNASVRPALDGEQRGSIVSGTIESLPAFRSSQLSSHENFASARSP
NHRLKYSKDNYKTSSLRSSEPNLSKQFGNIKELAKELDTLLECIEEKGGFRDACTVFLRG
SVEALEEGMGTLSENCRMWKSVMDERLGEIHHLLDKTVQVLARKIYVDGIVKQASDSQYL
ELWNRQKLSSELELKRRCILKLNQELTNQLIQLERHFNTLELQSFGGNAGFHTDRRTLQI
RYMPSRQLQSLHSLQNTMSSQLAAAEQLSECLSKQMSMLSIESPVRQKNVKKELFETIGI
PYDASFSSPDATKVGDTTSLKKLLLSSGSAATKGKSRRHQSSAMKSSDSETSRRRRDSLD
QSWASFEPTKTTVKRVLLQENQKKNVNKSFLLKDRQIFSSGLGDISTVHQEDQTSRSFLH
PLESKGLHYGSPKQTFEKKPTVPFKWATDPPMSSQPLGLRSPILQNNNVAMVSVSSSLVS
LPGGEIRSREAYNMTADKSKSMFSQIEKPDSVSTNETRHIQQTETRINKNSADSTVPPMQ
TPSFPKKPNEIPVSTTSSVLAKSAMQSVRPGPADTKSSFFESPNKNYEPPHSLLGASSVA
PTQPGKVPEINFATSKSQPSEKVSSSPSAFIPHAVSSSLMSNISPNISSSISARMSSAAM
SPSTSLTSSKVPRTELPSHAPPLTSEVSPELQPPLGKTLPSSNPGPSCLTSESLETDIQP
LMEKPARNVNPTPTPSVSESLKTEPQPPAGKNPPSVTPTTPTPSASESPKTEVPHPTGEV
SSKSDVDVPATAPHPNPTTFGLKLEPSASSVLTTGLSTGFAPVTQPSLNHSGSTASKVAL
NSQPQQPSSHNVPFGAPIPTSDSVSGKNESLDVAVTEEVEMEEEAPEASCTNELNLGNLG
GFGIGSTPIPTAPRANPFGSPFGSTGSNVASSSLTMTVPSGELFRPASFNFQSPQPSQKP
PPTNMGAFSGGFGTGAVAQAPAQSQFGQPAHIGSGQQALGSVLGTFGQSRQFGTGLPGSG
FAPTSGFGGGLAASSSTGGFASAATAGGFAGAASTGGGFAALASSGAGFAGVAAGGGFGS
VASGVGFGGVASGGSGIAGVASGGGGFAAAASSAGGFAAAPASGSGFGTSGSGFGAFGSQ
QGTGGFSGFPGNAGGSQQGIGGFSAFSGNPAGTGKPAELFTQMRK
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgggttttggaaaagagggagaaacaaaaacagaattcgaagaagagaaagaaggagat
catgttgaaagcagcgattactacttcgataagattgggaaacccattcccatcctctct
gatcaaactgtttcccctttccctttgcaaaaccctcctcttccctctcgccccctcgcc
ctctcccaatcccgcagtctcatcttcctcgcccatccctccgggtttctcgttgcgagg
actaaagatgtcatggatgccgctatggatattaaggaaaaaggaagctcttcttcttcg
tccattcaacatgtcagtcttgtggatgtccctattgggaaagttcacattttgacactc
tctactgactcctctactcttgctgtttctgttgctgctcatattcatttcttccatgtc
cattcccttctcgataaggagcaaaaaccgtccttctcttgctcgctgagtgaaccatca
tcatctactgtcaaggacattcaatggagaaggagaccggacaattcttaccttgttctt
tcaaatcaggggaagctatatcatggtgctcttgctgccgtcacccatactcttaaacac
ataacggacaatgttgatgctgttgaatggagtctaaaaggaaaatatattgctgtcgca
agagggagtcttatcagcattttgtcctcaaatttcaaggaaaggttcagtatatccctc
ccattcaggtcatggattgctgatagtgatgataactgcactgtcaaagtggactctatc
agatgggtacgtcatgatagtatcattgtaggatgctttcagcaaactgcagatggaaag
gaagaaaattactttcttcaagtaatcagcagaaaagatggcaagatttatgatagttct
tccaagccagtcgtgctatcattctatgatctattttcgggtcttgttgacgatattgtg
ccctatggaagtggaccttatttatccctggactatttagaacaatgtgggcttgcaatt
acagctaacaagaagaacacagatcagcacattgtgttgcttggttggtcagtggaggat
gagatgagtgaaactgcagttattgacattgaacgagatacttggctccctaggattgag
cttcaagaaaacggagatgataatttgatcatggggctctgcgttgacagggtttccctc
tatggaaaagtaaaagttgaagtgggggttgaagaacagaaagaactttcaccctactgt
gttctaatgtgtgttactcttgagggaaagcttgtcatgttccaggttgcaagtgccaca
ggagctaatattcaaccagaagttgattcttcccttgaggatgaggaagaggatattgct
ttggaacctgaagggtgtgatcagtctaacctttcttctgggttgcatgaagaaacattg
gaagagatatctctaggtcttcaaccacaacatgcgagcaacaaggaactacagctcaat
aaagatggtggaattcctacacagaaggaccttgttccttctgtcaagaatgagattcct
gaaaaactggaaataaaatcactttctgtacaacaaagtgcgaaattagggcagtcatct
ttgaaggcctcattcccagagatacctagggaagttggatcaaatgctttaccaggtgtc
ccatctcagtcatgggcaagtggaaaagttacattatcagcttcaactttgattcaagga
aatagacccgattataataatgttcaagttggtgctgcaaatgttcctagtgaccttggc
agtaaatctttttgcatgaaggatactgctggtcaatcaacttctttcaatgcttctgtt
agaccagctcttgacggggaacaaagaggttcgattgtgtcagggacaattgaatcattg
cctgcctttcgaagctcacagttgtcatctcacgaaaattttgcttcagccaggtctcca
aaccacagactcaagtattcaaaagacaactacaaaacttcatccctgaggagttcggag
ccaaacttatcaaaacaatttggtaatattaaagagctagccaaagagttggatacactt
ctggaatgcattgaagaaaaaggtggtttcagggatgcctgcactgtatttctgagaggc
tcagttgaagctttggaggagggcatgggaactctctctgaaaattgcagaatgtggaag
agcgtgatggatgagcggcttggagagatccatcatcttctagataaaactgtgcaagtt
ttggcaaggaaaatatatgtagacggtattgtcaagcaagcttctgatagccaatatttg
gaactctggaatcgccaaaagttgagctctgaacttgagttgaagcggcggtgtatacta
aaactaaatcaggagttgactaatcagttgattcaattggagagacacttcaataccctt
gaacttcaaagttttggtggaaatgctggatttcacacagatcggagaactttgcagatt
agatatatgccttcaagacaacttcagtccttgcatagtttacaaaacacaatgagttca
cagttagcagctgctgaacaactttctgaatgtctctcaaaacaaatgtccatgctgagt
atagagtcacctgtaagacaaaagaatgtcaagaaggaactttttgaaacaattggaatc
ccgtatgatgcctcttttagctcaccagatgcaacgaaagttggtgataccacttcattg
aagaaacttttactttcttcgggttctgctgccactaaaggtaagtctaggagacaccaa
tcaagtgctatgaaaagttctgattcagaaacttcaaggagaaggagggactcacttgat
cagagctgggctagttttgagcctacgaaaacaactgtaaaaagggtgcttttgcaagaa
aatcagaagaaaaatgtgaataaatcattcttgttgaaggataggcaaatttttagttct
ggcttgggggacatatccacagttcaccaagaagaccagacatcccgttctttcttgcac
ccattggaaagcaaaggccttcattatggatcccctaaacaaacgtttgagaaaaaacca
accgttccatttaaatgggctactgatcctccaatgtcatcacagcctctgggcttgcgt
tctcctatactgcaaaataacaatgtagcgatggtatcagtttcgtcatcactggtatca
ctgccaggaggagaaatacgtagcagggaagcctacaatatgactgcagataaatctaag
agtatgttttctcaaattgagaagcctgattctgtttccaccaatgagaccagacatatt
cagcaaactgaaactaggataaataaaaattcagcagactctaccgtgccaccaatgcag
acaccttcgtttccaaagaaaccaaatgagattcctgtttcaactaccagtagcgtgctt
gcaaagtcagcaatgcaaagtgtgaggcctggaccagcagacaccaaaagttcatttttt
gaatctcccaataaaaattatgagcctccgcactctttgttaggtgcctcttctgtggct
cccacccaacctggaaaagttcctgagatcaattttgctactagcaaaagccagcctagt
gaaaaagtttcatcttctccatcagccttcataccgcatgcagtttcatcatctctgatg
tccaatatatcaccaaacatctcatcatcaatatctgcacggatgtcgtcagctgcaatg
tcaccgagcacatctttaaccagttctaaggtccccaggacagagctaccatcacatgct
ccacctctaacttcagaggtttctccagagctgcaaccccctctagggaaaactctgcct
tctagcaatccaggtccttcatgtttgacatcagaatcccttgaaacagatattcagcct
cttatggaaaaacctgcacgtaatgtaaaccccactcctacaccttcagtgtcagaatca
cttaaaacagagccccaacctcctgctggaaaaaatccaccttctgtcactccaacgacc
cctaccccttcagcatcagagtcccccaaaacagaggttccacatcctacgggtgaagta
agttcaaaatcagatgtggatgttcctgcaactgctccacaccctaaccctactacattt
ggtttgaagcttgaaccttcagcatcatctgtccttactacaggactatcaactggattt
gcaccagtaacccagcccagcttgaatcactctggaagtactgcatctaaggtggctctg
aattctcaacctcaacagccatcttctcataatgttccttttggagcaccaatcccgact
tctgatagcgttagtggaaagaatgaaagtttggatgttgcagttacagaagaggttgaa
atggaggaggaggctcctgaggctagctgcacaaatgaacttaatttgggaaatcttgga
ggttttgggattggttcaacccctatcccaactgctcctagagcaaatccatttggcagt
ccatttggtagcacgggatcaaatgtagcaagctcttcgttgaccatgactgtacctagt
ggagagctctttcgacctgcctctttcaactttcaatctcctcagccatcccaaaagcct
ccaccaacaaatatgggtgctttctctggtggctttggcacaggagcagttgctcaagct
cctgctcaaagtcagtttggccagccagcacatattggatcaggacagcaagcactggga
tcagttcttgggacttttgggcagtcgagacagtttggaactggtttacctggaagtggt
ttcgctcctaccagtggttttggtggtggccttgctgctagtagttcaacaggtggcttt
gcaagtgctgcaactgctggcgggtttgctggtgctgcttctactggtggtggatttgct
gctttggcctcatctggtgcaggatttgctggtgtggctgctgggggtgggtttggtagt
gtagcttctggtgttgggtttggtggagtggcttctggtggcagtggcattgctggtgtg
gcttcaggtggaggtggatttgccgcagcagcctcgagtgctggtggtttcgcagcagcg
cctgcatctggtagtggatttggtacatcaggtagtggatttggggcttttggcagccaa
caaggtactggaggattctcaggttttcctggtaatgcaggaggcagccaacaaggaatt
ggtggattctctgctttcagtggtaatccagcaggaactggaaaacctgcggaattattt
acacagatgagaaaatag
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integrated database retrieval system
