Populus trichocarpa (black cottonwood): 7461648
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Entry
7461648 CDS
T01077
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7461648
03036 Chromosome and associated proteins [BR:
pop03036
]
7461648
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
7461648
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
7461648
SLIK complex
7461648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
CHD1-like_C
ResIII
HDA2-3
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
7461648
NCBI-ProteinID:
XP_002300156
LinkDB
All DBs
Position
1:complement(26956033..26972665)
Genome browser
AA seq
1768 aa
AA seq
DB search
MMAFFRNYTNEAVSQSVLEGKRQGRGVGRMLGNEDVDMTSSERELDMNTDVQYESEPDDV
VRLQSNVAADHDAGVNNSELQPSGRKNVAGKWGSSFWKDCQPMGNPGASDSGQDSKSEGR
NAVGSDDNVSNGRDDRLDSEDEEGQKEAGKGGKGHSDVPADEMLSDEYYEQDGEDQSDSV
HYRGFSQSVDLSSRLQKKPVPIKNNVSRRSRGLHNSEGYDDNNNDGDADYEEEEVEDDPD
DADFDPDYGIASGHAGDKDKDWEGKDSDEDNNSDDLVISDGDDDDDSYYTKKPKSRQHGK
SGRNTKSAKENKSLHASGRQKRGKPSFEEDEYSAEDSDSDSDAVSKNMTKRGAHFRKSNA
RSAMSTNIGGRNNEVRTSSRSVRKVSYVESDESEEIDEGKKKKAQKEEVEEEDGDSIERV
LWHQPRGMAEDAVRNNRSTAPILLSHLFDSALDWKEMEFLIKWKGQSHLHCQWKSFSELQ
NLSGFKKVLNYTKKVMEDVRYRRKFTREEIEVNDVSKEMDLDLIKQNSQVERIIADRINK
DSSGNVVPEYLVKWQGLSYAEATWEKDVDISFAQDAIDEYKAREAAIAVQGKMVDLQRKK
GKASLRKLEEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLG
FLQNGQQISGPFLVVVPLSTLSNWAKEFRKWLPNMNVIVYVGTRASREVCQQHEFYNDKK
VGRPIKFGTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLLEFSTKNKL
LITGTPLQNSVEELWALLHFLDPDKFRSKDDFIQNYKNLSSFNEIELANLHMELRPHILR
RVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQDLNKGVRGNQVSLLNIVVELK
KCCNHPFLFESADHGYGGDISTNDSSKLERIILSSGKLVILDKLLVRLHKTKHRVLIFSQ
MVRMLDILSQYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGIN
LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVL
DHLVIQKLNAEGRLEKKEAKKGSYFDKNELSAILRFGAEELFKEDNDEESKKRLLSMDID
EILERAEKVEEKEAGGEDGNELLGAFKVANFCSAEDDGSFWSRWIKPDAVTEAEEALAPR
AARNIKSYKEDNQPERSNERSNKRKKKGLEASEPQERVQKRRKADYSTPLASMIEGASAQ
VREWSHGNLPKRDALRFSRAVMKFGNLNQIDLIVEEVGGTVAAAPPEEQIELFDALVEGC
REAVEVGNLDPKGPLLDFFGAAVKANDLLSRVQVLQLLAKRISRYENPIAQFRVLTDLKP
SNWSKGCGWNQIDDARLLLGIHFHGFGNWEKIRLDERLGLSKKIAPAELQHHETFLPRAP
NLKERANALLEMELAAVGGKNANAKGGRKASKKERENVLNFSAARGRDKKVKPGSVMVSV
QTNKNRPQRPHRVEQLAKEEGEMSDNEELCEQFKEVKWMEWCEEVMFDEIKTLKRLNKLQ
TTSADLPKEKVLSKIRNYLQLIGRRIDQIVFEYEAELYKQDRMTMRLWKYVSTFSNLSGE
RLRQIYSKLKQEQEEDAGVGPSHANGAAYGSVDKDGDSNNFPPLSRNFERQRGYKNASAY
PMSEPINRGHDAGKFEAWKRRRRAEADIQPQFQPPLQRPISNGTRLSDPNSLGILGAGPA
DNRPFIERPFRARQTGFTPKQNFTSGIK
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgatggcatttttcaggaactatacaaacgaagcagtttcacagagtgtcctagaagga
aagaggcaaggtcggggtgtaggtagaatgttgggcaatgaggatgtagatatgacttct
agtgaaagagaattggatatgaacacagatgtgcaatatgaaagtgaaccggatgatgtg
gttaggttgcaaagtaatgtagctgccgaccatgatgctggtgtgaataattcagagctg
cagccttctggaaggaaaaatgtggctggaaaatggggttccagtttttggaaggactgc
caacccatgggtaatcctggggcatccgattctggacaggattccaaatcagagggtaga
aatgcagtagggtcagacgataatgtatcaaatggaagggatgatagattagattcagaa
gatgaagaggggcaaaaagaagcgggtaagggggggaaaggccattctgatgtccctgca
gatgagatgttgtctgatgaatactatgagcaggatggggaggatcaaagtgactcggtg
cattatagggggtttagccagtctgttgatttgagttctaggctgcaaaaaaagccggtt
cctatcaagaataatgtctccaggaggtcaagaggtttgcacaatagtgaaggttatgat
gacaataataatgatggcgatgctgattatgaggaagaagaagttgaagatgatcctgat
gacgcggactttgaccctgattatggcatcgctagtgggcacgcaggggacaaggataaa
gactgggagggtaaagattcagatgaagataataacagtgatgatttggtcatctcagat
ggtgatgacgatgacgattcttattacacaaagaaacctaagagtaggcaacatggtaaa
agtgggcggaatacaaaatctgccaaagagaacaagtcattgcatgcttctggacgacaa
aagagagggaaaccatcgtttgaagaagatgagtattcagcagaggattctgacagtgat
agtgatgctgtttcaaagaacatgaccaagagaggtgcacattttcgtaaatctaatgcc
cggtcggctatgtcaacaaacattggtggaagaaacaatgaggttcgaacttctagcagg
tcggttcgtaaggtgtcatatgttgaaagtgatgaaagcgaagaaattgatgaagggaaa
aagaagaaggcccaaaaggaagaagttgaagaagaagatggtgactccattgaaagggta
ctgtggcatcagccaaggggcatggctgaagatgcagtgaggaacaatagatcaacagca
cctattctcttaagccacctgtttgattctgctcttgattggaaagaaatggagttcttg
ataaagtggaaaggccagtcacatttgcactgccaatggaaatcattctctgaattacaa
aatctgagtggttttaagaaggtactgaactacactaaaaaagtgatggaagatgtgagg
tacaggagaaaatttacacgcgaggagatcgaggtgaatgatgtgagcaaggaaatggat
ttggatctaatcaagcaaaatagtcaggtggagagaattattgctgatcgaatcaataaa
gatagctctggaaatgttgtgccggagtatttagtcaagtggcaaggactctcttatgct
gaagctacttgggaaaaggatgtagacatttcttttgcacaagatgctattgatgagtac
aaggcacgtgaggctgcaattgctgtacaggggaaaatggtggatctacagcgtaagaaa
ggaaaagcaagtttaaggaagcttgaagaacagcctgaatggctgagaggaggaaagctt
cgtgattaccagctcgagggtttgaattttctagttaacagttggagaaacgatacaaat
gttattttagctgatgaaatgggtcttggaaaaacagtccagtcagtttccatgctcggt
tttttgcagaatgggcagcagatctctgggccttttcttgttgttgtacctttatccact
ttgtctaactgggctaaagaatttagaaagtggcttcccaatatgaatgttatagtatat
gttggtacacgtgctagtcgagaggtttgtcagcagcatgaattttacaatgataagaaa
gttgggcggcctataaaattcggcactctgctgaccacatatgaagttgttttgaaggat
aaggcagtgctttctaagatcaagtggaattatttaatggtcgatgaagctcataggtta
aagaacagtgaagcgcagttgtacacaactcttttggaatttagcaccaagaacaagttg
ctaattactggcactccattacagaacagtgtggaagagctatgggctttgcttcatttc
cttgatcctgacaagtttaggagcaaggatgattttattcaaaattataagaatcttagc
tcttttaatgaaattgagctcgctaatcttcacatggaattgaggcctcacattctcaga
agagtcatcaaggatgtggagaaatccttgcctccaaaaatagagcgcattctgagggtt
gaaatgtctcctctacagaaacaatactataaatggattttggaacgtaacttccaggac
ctgaacaaaggagttcgtgggaatcaggtctcacttctgaatattgtggtagagttgaag
aaatgctgcaatcatcccttcctatttgaaagtgcagatcatggttatggcggggacatc
agtaccaatgatagcagtaaactggagaggattatcttaagcagtggaaagctagttata
cttgacaaactacttgtcagattgcacaagacaaaacatcgtgtcctgattttttcccag
atggtcagaatgttggatatactgtctcagtacatgtcactcagagggttccagtttcaa
aggcttgatggtagcacgaaggctgagttgcgtcagcaggcaatggaccatttcaatgca
cctggcagtgatgatttctgcttccttctttcaactcgggctggtgggttaggcatcaat
cttgcaactgctgacacagttataatatttgattcagactggaatcctcaaaatgacctg
caggcaatgagtagagctcataggattgggcagcaagaagttgttaacatctatagattt
gtgacaagcaaaagcgttgaggaagatatcctagagagagctaagaaaaagatggttctt
gaccatttggtgatccaaaaactgaacgcagagggtagattggaaaagaaagaagcaaaa
aaagggagttatttcgacaaaaatgagctctcagcaattttaagatttggggccgaggaa
ctttttaaagaggacaatgatgaagaaagtaagaaaagactcttgagtatggatattgat
gaaattcttgaacgagcggagaaagttgaagagaaggaagctggaggagaggacgggaat
gaattgttgggtgcttttaaggttgcaaatttttgtagtgctgaagatgatgggagtttc
tggagtcgttggataaaaccagatgctgtaactgaggctgaagaagctttagctcctcgg
gctgcaagaaatattaagagttacaaggaggataatcaacctgagagaagtaatgagaga
agtaacaaacggaaaaagaaaggtttggaagcatcagaaccacaggagagagtgcagaag
cgtcgcaaagcagattattctacccccctagcttcaatgattgaaggagcatctgctcaa
gtacgagaatggtctcatgggaatctgcctaagagagatgctttacgtttttctcgtgcg
gtgatgaagtttgggaacttgaaccaaatagacttgatagttgaggaggttggtggaaca
gtggcagcagccccccctgaagaacagatagagctttttgatgctttggttgaaggttgt
agagaagcagttgaagttggaaatctggacccaaagggtcctttgttggatttttttggt
gccgctgtgaaggcaaatgatctattgagccgtgtgcaagtacttcagctgctagcaaag
cgaattagccgttatgaaaatcccattgcacaatttcgagttttgacggacctgaagcct
tcaaactggtctaagggatgtggctggaatcagattgatgatgcgaggttgcttctggga
atacactttcatggatttggcaattgggagaagatacggttagatgaaaggcttggcctt
tcgaagaagattgctccagcagaactccagcatcatgagacctttctaccacgtgctcca
aatttgaaggaacgtgctaatgcactcctggagatggaacttgcagctgttggtggaaag
aatgcaaatgctaagggtggtcggaaggcctccaagaaggagagagagaatgttttgaac
ttctctgcagctcggggcagggacaagaaagtgaagcctgggtctgtaatggtgagtgta
caaacaaacaagaacaggcctcagagaccccatagagttgaacagttagcaaaagaggag
ggtgagatgtcagacaatgaggaattatgtgagcagttcaaggaagtaaaatggatggaa
tggtgtgaagaagtcatgtttgatgaaattaaaaccctgaaacgtcttaacaagttgcag
actaccagtgctgaccttccaaaggaaaaggtgctttcaaaaataaggaattatttacag
cttattggacggagaatagaccaaattgtcttcgaatacgaggcagagctttataaacaa
gatagaatgactatgcgattatggaagtacgtttcaaccttttcgaatttatccggtgag
agacttcgtcagatttattcgaaacttaaacaagagcaagaggaagatgcaggggttgga
ccatctcatgccaatggtgctgcatatggttctgttgacaaagacggtgattccaacaat
tttccacccctttctcgtaattttgagaggcaaagagggtataaaaatgcatcagcctat
ccaatgtcagaaccaataaacagaggtcatgatgctgggaaatttgaagcgtggaaacga
cgcagaagagctgaagctgatattcaaccccaatttcagccccccttacaaagacctatt
agtaatggtacccgtttatctgaccctaactcattggggattcttggggctggaccagct
gataataggccttttattgagagaccttttcgagcacgtcaaactggttttactccaaaa
caaaatttcacttcaggtataaagtag
DBGET
integrated database retrieval system
