KEGG   Populus trichocarpa (black cottonwood): 7462542
Entry
7462542           CDS       T01077                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7462542
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7462542
Spliceosome [BR:pop03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    7462542
 Complex B
    7462542
 Complex C
   U2 SnRNP specific factors
    7462542
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin DUF2849
Other DBs
NCBI-GeneID: 7462542
NCBI-ProteinID: XP_024460900
LinkDB
Position
7:9229948..9234214
AA seq 806 aa
MPAAAILSLPAPPVNGDGSPPPPSQVIEQQPREGRPENEEQNRAPVATHTRTIGIIHPPP
DIRSIVDKTSQFVAKNGPEFEKRIIANNANNAKFNFLNPSDPYHAYYQHRLTEFRAQNQA
PGQQPTSQPADSAAPDSATKPDLATDSNEAATKPDPAAQFRLPPPKVLEPPEAEQYTVRL
PEGITGEELDIIKLTAQFVARNGQTFLTGLTNREMNNPQFHFLKPTHSMFTFFTGLADAY
SKVLMPPRGLTEKLTKSVDDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERMQMAMID
WHDFVVVETIDFADDEDEDLPPPMTLEEVIRRSKISAMDEDEIIEPGKEMEMEMDEEEMQ
LVEEGMRIASIEENDGEKDTRTNEEPEPPMRIVKNWKRPEERIPAERDPTKFVVSPITGE
LIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARLRPDIFGTT
EEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGRTANQAMSQNAGEDQNEAVNNDARNLP
GPAAPPPRPGVLPVRPLPPPPGLQLNLLRAPPNTVQYSGPAGGAYPVPPQRPVGIPMMQP
NYPPPPPMQMASGQQPIMVNRPPPMPPSMSGNPSMHVPPPPGSQYNSMAVHRPFVPLHVP
QPGLPMMPPPPPLPQGMPPPPPPEDAPPPLPDEPEPKRQRLDDSALVPEDQFLAQHLGPV
RITVAVPNLDEGNLKGQVLEIMMQSLSETVGSLKEKIAGEIQLPANKQKLSGKAGFLKDN
MSLAYYNVGPGESLSLSLRERGGRKR
NT seq 2421 nt   +upstreamnt  +downstreamnt
atgccagccgcagcaatcttatcgcttccagcacctcctgttaatggagacgggtctcct
cctccaccatcccaagtgatagaacagcagccaagggaaggtagaccggaaaatgaggag
cagaacagagcaccagttgcgacccatacgagaaccattggaattattcatcctccaccg
gatattaggagtattgttgataaaacctcgcagtttgtggcaaaaaatggacctgagttt
gagaagaggattattgcaaacaatgctaataatgccaagttcaattttttgaatccatcg
gatccatatcatgcttattatcagcatcgtttgacagaatttcgtgcacagaatcaagct
cctggacagcagcctacttcacagcctgcggattcagctgcccctgattcagctacaaaa
cctgatttggctactgattcaaatgaagcagctaccaaaccggatcctgcagcccagttt
agactacctcctcctaaggttcttgaacccccagaagcagagcagtatactgttcggctt
ccagaaggaattactggagaggaacttgatattattaagctcacggctcagtttgtagct
cgaaatgggcaaacattcttgactggattgacgaacagggagatgaacaatcctcagttc
cactttttgaagccaacccacagcatgttcaccttttttactggacttgctgatgcatat
tctaaagttttgatgcctcccaggggtttgactgagaagctgacaaagagtgttgatgac
atgaccactgtgcttgaaaggtgcttgcatcgccttgaatgggaacgctcacaagagcag
gcaagacagaaagctgaggatgagattgaacaggagcggatgcaaatggcaatgattgat
tggcatgattttgttgtggttgagactatagactttgcagacgatgaagatgaggacttg
ccccctccaatgacacttgaggaggttataaggaggagcaagatatctgctatggatgaa
gatgaaatcattgagcctggaaaggagatggagatggaaatggacgaggaagagatgcag
ctagtcgaggaaggcatgaggattgcaagtatcgaagagaatgatggtgagaaagacaca
aggacaaatgaggaaccagaaccacctatgaggattgtgaaaaattggaagagacctgag
gagaggatccctgctgaaagagacccaacaaagtttgttgtttcccctatcactggtgag
ctaattcccattagtgagatgtccgagcatatgagaatttccctcattgatcctaagtac
aaggagcaaaaggaaaggatgtttgccaagattcgggaaactactcttgctcaggatgat
gagatctcccgaaacatagtgggacttgcacgattacgtcctgatatctttggcacaacg
gaggaagaagtttctaatgctgtgaaggctgaaattgagaagaagaaagatgagcagccg
aagcaggtcatatgggatggtcactcgggaagcattgggcgcactgcaaaccaagctatg
tctcagaatgctggggaggatcaaaatgaagctgttaataatgatgcaaggaaccttcct
ggcccagcagctccccctccccgacctggtgtgctgccagtccgtcccctccctccacca
ccaggactgcagttgaatcttcttcgtgcacctccaaatacagttcaatattctggtcca
gctggtggggcatatcctgtacctccacaaaggccggtcggtataccaatgatgcagcca
aattacccccctcctcctccaatgcaaatggcatctggacagcaacccattatggtaaat
cgaccaccccctatgcctccatctatgtctggaaatccaagcatgcatgtgccgcctcca
cctggatctcaatataattctatggcagttcatcgaccttttgtccctcttcatgtaccc
caacccggattgcctatgatgcctccaccacctcctttgcctcaaggaatgcctccacca
cctccacctgaggatgctcctcctccacttccagatgagccagagcccaagaggcagagg
cttgatgattctgcgcttgttccagaagatcagtttctggctcaacatctgggacctgtg
cgcatcactgttgccgttcccaatcttgatgaaggaaatctcaaagggcaagttctggag
attatgatgcagtccttgtccgaaactgttggcagcctgaaggaaaaaattgctggagag
atccaacttcctgccaacaaacagaaattgagcggaaaagctggttttctcaaggataat
atgtcacttgcatattacaatgttggaccaggagagtctctgtctctctctttgagagag
cgtggtggtagaaagagatga

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