Populus trichocarpa (black cottonwood): 7467858
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Entry
7467858 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC7467858
Organism
pop
Populus trichocarpa (black cottonwood)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH_3
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
7467858
NCBI-ProteinID:
XP_052306625
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Position
2:complement(5424111..5433827)
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AA seq
2123 aa
AA seq
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MVQTRPHRYVKDQRIATTAMDPRSSYFHHTKYANPPSPTLPLPPPPPPPYRNNLNFHHHI
NFLAPQPPPPQQLRPPQTPQFSPRNPQFSYNHSPNHPXIHDNYHPQLSHHDLPHFTQLPR
VSHQFNDERLPPRRLPESDHRVHEPRPDFRVLRHDRQTRHELEGNPNPNSRLIQDRNIVI
DRESEHYHIRGEFGSNSDRSSAGDFRTVSNQVRGFESNSGNYENRRRLNYDYHDKGSANQ
SWFRDREVVREPRDSSIEFGSNEIGDGETRIATGKREHYRSREGNLEVERHGGKRSREGS
YEFNRTPRKQVQKKSALLRIQQPSYRNREDERLPYSGYVDDTKSSSFRGKDQESGFFRGK
DKDKVIHTDRGMGEGEREGSPVELDVSFKSNSLVAKAILTPSSTTVGASETILTPRNSKV
RKVLVPAKDKDSINSSMNKPSKVAVEVGKGASVASKASSSDKDLKKSREGVIASGITNVR
DSSSMPLKNRVEMSMKRTVAVRIGTPGKISSLGGKKKKVVKRVVKKVVSHNSTLSSSQPT
KTRDEPVKADSFAHTPAEPRDTDKAATVADVNSQPCPIEATVIPENDRVERFEKFMESGQ
AGAGAYSGNLFSYNSSGKKSCSRSPLGSSNHNETKFGESFVNGDCAEALHAIPNIDDSLT
KSLDEIISSDIGGVEDVSKQPCQNGDSCLLENNAVRGSLKVMDSIEGNTDFGLLSLEKTI
IHEDPMYSCIPVMGLDVASINSQQRITVSDKGTSDVGCKEPCRNQGSPLAESGITDFLQG
ASFPVGSNEIFTVSISEETGSQNAVIRLNQGVGTILGSPNCFTNVEEIDISGHGTGDGMG
EELSQYGAAKTLESEPIRGSLDTKVSTSGGEEEANDIKENDKKIEMPQSDLSRTDVPDMH
LEPANMVTSTTAHWVDKTLRLCFEDDGTAQCTFSGAQFVDAGSQSCSNVVSVLHEGSLTD
VSAAKVSVRSSADVGQRGASQRNEKNRKSSAPQLELCSPVESDADEGPVFAGNSTSGMEV
PSNSGDSLTLPKGEVVVSDMDSLCTSDLLLAQKGITALLENGSAGEHLSSVASIKDAFEV
DGLKDVQSHLSVEELAVKKVTSHSLFVSVGEDIINTTPVMVGGRNQNDYMDIDAVEGAKV
DIDAAEEQVGTESVTDHCQIPSKLQTQYLDENIPSIDVDDGGFHGAKNDSPCMSNNPSSF
GDGFGVSFTNSGDELVEIVPETLSDRGSPETLPDVMGTSLSKNSVEKIHENDDKIPAERP
VINVGSDSSMSISSSQNAKVVLNLDHAVERDQLLTGKTGHLPSQDSKITTQMPNAKSGDL
YGKKNHSSHPISKIYSGRSSFVFSASKSSASSSRISKTRTWHRNDNCSDSAPPSNKAFSS
TVPAQRLFPRKGDKSQRTSYIRKGNSLVRKPTSVAQSPGPHALSSSVYQLNSSGTDEPKK
SAGSDSRIDLADPLNVLRTGGMDASFEKPRTPSLSSVSKISNRASNSLGGRASSPLAEHL
HSLCTETVTVPAKLLESNDVPKSSDDVLKISGSPITQNSQISNLECHSDTNDGNTVALAN
GKSLTYVKRKSNQLVASSNPCASSVQNAHNTSSDSYYKRRKNQLIRTSLESQIKQTASIP
DESLNSEGQTALNSFSRNFSKRRQRKVVTKTCKPSKLSLVWTLHGAQLSKNDGDSSHCGK
VLPHLFPWKRATYRRSSLPNSSSISDHSSLSTIGKLLLLRKRNTEYTRSKHGFSLRKSKV
LSVGGSSLKWSKSIEKHSKKANEEATLAVAAAERKKREQRGAAHVACPTKSRNISRERIF
RVGSVRYKMDSSRRTLQRISDDESSCAGALQKEKDAKKLYIPRRLMIGKDEYVRIGNGNQ
LIRDPKKRTRILASEKVRWSLHTARSRLARKRKYCQFFTRFGKCNKDDGKCPFIHDSSKI
AVCTKFLNGLCFNPDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGF
LRGYCADGNECPKKHSYVCPSFEAIGSCPQGSKCKLHHPKNRTKEKKSKRSRENNAQGRY
FGLMHINATKTRNAVPGKLYVQDNDTICFKGIADYISLDVSDEEVVENNNPGDLHTAFGD
SDPLNLQLGDLDKLIKPVRIMNI
NT seq
6372 nt
NT seq
+upstream
nt +downstream
nt
atggtccaaacgcggccacacagatacgtcaaagatcaaagaatagctaccaccgctatg
gatcctcgatcttcctatttccatcacacaaagtacgccaatcctccttctcctactctt
cctcttcccccccctcctcctcctccttaccgtaacaaccttaattttcatcaccatatc
aacttccttgcaccacagccgccacctccacaacaactccgtccaccacaaacaccacaa
ttctcccctcggaaccctcaattctcctataaccatagccctaatcaccccnnaattcac
gataactatcacccccagctgtcgcaccatgacctccctcacttcactcaactgcctagg
gtttctcatcaattcaacgacgagcgtctgccgccgcgtcgtttaccagaatccgaccac
cgtgttcatgaaccccgacctgattttagggttctgcgtcatgatcggcaaactaggcat
gaattggaaggtaatcccaatcctaattctagacttattcaggaccgtaatatcgtgatt
gatcgtgagagcgagcattatcatattcgtggtgaatttggatcgaattctgatagatct
tctgctggcgattttcgaactgtatcgaatcaagtgaggggttttgagtcaaattcgggg
aattatgagaatagacgtcgtttgaattatgattatcatgataaggggagtgcgaatcag
agttggtttcgtgatagagaggtcgtgagagaaccgcgtgattcatcgattgaatttggt
agtaatgagattggtgatggtgaaactaggattgctactgggaaacgtgagcattatagg
agtagagaagggaatttggaggtggaaaggcatggtggtaaaagaagtagagagggtagt
tatgagttcaataggactcctaggaagcaggtacagaaaaagagtgctctacttaggatt
caacagcctagttacaggaacagagaggatgagagattgccttactcaggttatgttgat
gataccaaatctagttcttttagaggtaaagatcaggaatctggtttttttagaggtaaa
gataaagataaggttatacacacagatcgtgggatgggagagggagaaagagagggaagc
ccagtagagcttgatgtgtcttttaagtctaattcattggtagccaaggcaattttgacg
ccttcttcaactacagtgggtgcttctgaaacgattttgacacctaggaatagtaaagtt
aggaaagtgctggtccctgctaaggataaggacagtattaattcatcaatgaataaaccc
agcaaggttgcagtagaagtgggcaaaggtgcaagtgttgcaagtaaagcttccagttct
gacaaggatctaaagaagtccagagagggagttatagcttctggtattactaatgtgcga
gatagtagttcaatgcctctaaagaatagagtggagatgtctatgaagaggactgtggct
gttagaattggaacgcctggtaaaatatcttcactcggtggaaagaagaaaaaagttgtc
aagagagtagtgaagaaagttgtaagccataattcaactttatctagttcacaaccaaca
aaaactcgtgatgaacctgtgaaagcagatagctttgcccatactccagctgaaccccgt
gacactgacaaggctgcaactgtggctgatgttaattcacagccttgtccaattgaagct
acagtgatacctgagaatgacagggtggagagatttgaaaagtttatggaatcagggcag
gctggtgccggagcatattctggtaatttattttcatataatagcagtggaaagaagagc
tgctcacgttctcccttgggctcttcaaatcacaacgaaaccaaatttggtgagagtttt
gtaaatggtgattgtgccgaagccttgcatgctatcccaaatattgacgacagtttaaca
aaatctctggatgaaattattagctctgatattggtggtgttgaagatgtcagcaagcag
ccttgtcagaatggagattcttgcttacttgagaacaatgcagtgaggggatctctcaag
gttatggattctattgagggcaatactgattttggtttattaagtttagaaaaaacgata
attcatgaggatcctatgtattcatgtatccctgtgatgggtttagatgttgcttcaatc
aactcacaacagagaattacggtttctgacaaggggacatctgatgttggttgcaaggag
ccctgtagaaatcagggtagcccattagctgagagtggcatcactgatttccttcagggt
gctagtttccctgtaggaagcaatgaaattttcactgtatccatttcagaggaaacagga
agtcagaatgctgtcatacgcctcaatcagggagtagggaccattttgggttcaccaaac
tgctttactaatgtagaagaaattgatatctccggccatggaactggtgatggtatgggt
gaggagctatctcaatatggggctgctaaaacattggagagtgaacccatcagaggttct
ctagacaccaaggtttctacaagtggcggcgaggaggaggcaaatgacattaaggagaac
gataaaaaaattgaaatgcctcagtcagatttatcaaggacagatgtacctgacatgcat
ttggagcctgcaaatatggtcaccagtaccactgcacattgggtggacaaaactttgaga
ttatgttttgaagatgatggtacagctcagtgtacgttttctggtgctcaatttgtggat
gctggctcacaatcttgtagtaatgttgtcagtgttcttcatgagggcagtttaacagat
gtttcagcggctaaggtttctgtcaggagtagtgctgatgttggtcaaagaggggcatca
caaaggaatgaaaagaatagaaagtcctctgctcctcaactggaattgtgttctccagta
gaatctgatgctgatgagggacctgtatttgcaggtaactctacatcaggtatggaagtg
ccatccaattctggtgatagtctaacactgccaaaaggggaagttgtagtgtctgatatg
gattctctgtgtacttctgatttgctattggcgcagaaggggatcactgcgctgcttgaa
aatggttcagcaggggagcatttaagctctgtggcttctatcaaagatgcatttgaagtt
gatggtctaaaagatgttcaatctcatttgtctgttgaggaactggcagttaaaaaagtg
acatcacatagtctatttgtatcggttggcgaggacatcataaacaccactccagttatg
gttggaggtaggaatcaaaatgattacatggatattgatgctgttgagggagccaaagtg
gacattgatgctgcagaagaacaagtcggtactgagagtgtgactgatcattgccaaatc
ccttcaaaacttcagacccagtacttggatgaaaatattcctagtatagatgtggatgat
ggcgggtttcatggtgcaaagaatgattcgccttgtatgtcaaacaatccatcttcattt
ggagatggctttggagtttcttttaccaattccggtgatgaacttgtggagattgtacct
gagacactgtctgataggggttctccagaaactttgcctgatgtcatgggcacatccctc
agcaaaaattcagttgaaaagattcatgagaatgatgataaaattccagctgagaggcct
gtaatcaatgttggttctgactcatctatgagtatttcaagttcacaaaatgctaaagtt
gttttaaatttggatcatgcagtggaacgtgatcagttgttgactgggaagacagggcat
ttgccttcacaggattccaaaattacaactcagatgccaaatgccaagagtggggattta
tatggaaagaagaaccatagtagtcatcctatttctaagatttattcaggtcgctcatct
tttgttttttctgcttcaaagagttcagcttcttcatctcgcatctcaaaaactcgaaca
tggcatcgaaatgataattgctctgattctgctccgccatcaaacaaggctttctcgagc
actgttcctgcgcaaaggctatttcctagaaaaggcgataagtcccagcgcacctcttac
attcgcaagggtaacagtcttgtcagaaaacctacttcagttgctcaatccccaggcccc
catgctttgagttcttctgtatatcagctcaactcttctggtactgatgagccaaagaag
agtgctggctctgacagtagaattgatcttgctgatcctctcaatgttttgagaacagga
ggcatggatgcttcttttgagaaaccgagaacaccttcactatctagtgtctctaaaata
tcaaatcgagcaagcaactctttggggggtcgtgcatcttcaccattagctgagcatctt
cactctctttgtactgaaaccgtaacggtcccagcaaaattgttggaaagcaatgacgtt
ccaaagtcttctgatgacgtgttgaaaatttcaggatctccaattactcaaaatagccaa
attagtaatttggaatgtcacagtgatacaaatgatgggaataccgtggctttagcaaat
ggtaagagcctaacatatgttaagcgaaaatcaaatcagttggttgcatcttcaaatcct
tgcgcgtcttctgttcaaaatgctcataacacatcatctgatagctattacaagaggagg
aaaaatcagctaattaggacttcactggaaagtcagatcaagcagacagccagcatccct
gatgaaagtttaaattcagagggacaaactgctcttaactctttcagcagaaattttagt
aagagacgacagcgtaaagttgtgacaaagacttgtaaaccttctaagttgtctttagtc
tggacactgcatggtgcacagttatcaaagaatgatggtgattcgtcgcattgtgggaag
gtcttgcctcatttgtttccctggaaaagagcaacctataggagaagttccttgccaaat
tcgtcttccatttctgatcatagttccttgtctacaattgggaaattgctacttttgaga
aagaggaatacagagtacacgaggtcaaaacatggattttcacttcgaaaatccaaggta
ttaagtgttggtgggtctagtttaaaatggtcaaaatccattgaaaagcactcaaagaaa
gccaatgaggaagctaccctggctgttgctgcagcagagagaaagaaaagggaacagaga
ggtgctgcacacgttgcttgtccaacaaagagtagaaacatttctcgagaacgcattttc
cgtgttggttcagtacgctacaaaatggattcttcaaggcggactcttcagaggatatca
gatgatgagtcatcgtgcgccggagcccttcaaaaagaaaaggatgccaagaagctgtat
attccaaggagattaatgattgggaaagatgaatatgttcgaattggcaatggtaaccag
ctcataagagatcccaagaagcgaactcgcattttggccagtgaaaaagtacgatggagt
ttgcacactgcaagatcacggttggccagaaagcgaaagtactgtcaatttttcacaaga
tttggaaaatgcaacaaagatgatgggaaatgtcctttcattcatgattcctccaaaatt
gctgtctgcacaaagtttttgaatggtttatgtttcaatcctgactgcaaattgactcat
aaggtcattcctgaaaggatgcctgattgttcttactttttgcaaggcctttgtaccaat
aaaaactgcccttatagacacgtgcatgtcaacccaaatgcttctacctgcgagggattt
ctcaggggctattgtgctgatgggaatgagtgtccgaagaagcacagctatgtctgcccc
tcctttgaagcaataggatcctgtcctcaaggatccaaatgcaagctacaccaccccaaa
aacagaacgaaggaaaagaaaagcaagcgatcacgagagaacaatgcacaagggcgatat
tttggcttgatgcacatcaatgccactaagacgagaaatgcagtgcctggaaagctctat
gtgcaagataatgataccatttgttttaaaggaattgctgattatatcagccttgatgtt
agtgatgaagaagtggtagaaaataacaatccaggtgatctgcatacagcattcggtgat
agtgaccccttgaacttgcaattaggtgatcttgataagttaattaaaccagtccgtata
atgaacatctaa
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