Populus trichocarpa (black cottonwood): 7469799
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Entry
7469799 CDS
T01077
Name
(RefSeq) protein transport protein Sec24-like At3g07100
KO
K14007
protein transport protein SEC24
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7469799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7469799
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
7469799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Vps36-NZF-N
HVO_2753_ZBP
Motif
Other DBs
NCBI-GeneID:
7469799
NCBI-ProteinID:
XP_002311138
UniProt:
B9HM39
LinkDB
All DBs
Position
8:2914357..2924844
Genome browser
AA seq
1043 aa
AA seq
DB search
MGTENPGRPNFPLTGSPFAAPPPTTTPFSASGPVVGSEASGFRPPAQPPQNAMPSVSSGP
VVGPQASGFRPNNLPARFNDPPVISPPTAYVTPIGGPPFQRYPTPQFPSAHQAPPPRAPP
IGQPPFQSPAGQVPSPASFHPQPQVHAVPMGSPPSRANNPQLPSDSSSFGSRANFQPPFS
SMDSSYSASRANLQPPLPGYVKQANAVSQAPPMAPFQAQQGSYAAPTPTPPPTFHPQQGG
FAQPPPIAAPFGLHSRDQIQHPGSAPPIGGIQGLAEDFGSLSIGSVPGTIDSGLDPKALP
RPLDGDVEPNSLGEAYSMNCNPRYLRLTTSAIPSSQSLLSRWHCPLGAVVCPLAEAPDGE
EVPVINFVSTGIIRCRRCRTYVNPYVTFTDSGRKWRCNICALLNDVPGDYFAQLDATGRR
IDLNQRPELIKGSVDFVAPTEYMVRPPMPPLYFFLIDVSVSAVRSGMIEVVAQTIKSCLD
ELPGFPRTQVGFITFDSAIHFYNMKSSLTQPQMMVVTDLDDIFVPLPDDLLVNLSESRLV
VEAFLDSLPSMFQDNMNMESALGPAVKAAFMVMSQLGGKLLIFQNTMPSLGVGRLKLRGD
DLRVYGTDKEHALRTPEDPFYKNMAAECTKYQIGVNVYAFSDKYIDIASLGALAKYSGGQ
VYYYPSFQSASHGEKLRRELARDLTRETAWEAVMRIRCGKGIRFTSYHGNFMLRSTDLLA
LPAVDCDKAYGAQLSLEETLLTSQTVYFQVALLYTASCGERRIRVHTAAVPVVTDLGEMY
RQADAGAIVSLFARLAIEKSLSHKLEDARSSVQLRIVKALREFRNLYAVQHRLGGRMIYP
ESLKLLPLYGLALSKSAALRGGYADVQLDDRCAAGFTMMALPVKKLLKLLYPSLIRVDEY
LLKPSAQTDEFKNIMKRLPLTAESLDSRGLYVYDDGFRFVVWFGRMLSPDLAMNLLGQDA
AAEFSKVSFGKHDTEMSRKLMGVLRKLRESDPSYYQLCNLVRQGEQPREGFFLLTNFVED
QIGGTSGYSEWMVQIHRQVQQNA
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggggactgaaaatcctggtcgtccaaatttccccttgaccggttcaccttttgctgct
cctcctcctacaacaacaccattttcagcatctggcccggtggtgggatcagaggcctca
ggctttagacccccagctcaacctccccaaaacgccatgccttctgtgtcatctggacct
gtagttggaccacaggcctctgggttcaggcctaacaatctccctgctaggtttaatgat
cctcctgtgatttctccaccaacagcatatgtcacacccatcggtggaccccccttccag
cgttatccaacaccacaatttccctctgctcatcaagctccaccaccccgagctccaccc
attggccaaccaccatttcaatctcctgcaggtcaagtgccatctccggcttcctttcat
cctcagccacaagtacatgcagtgccaatgggatctccgccatcaagagcaaataatcct
caattgccatcagattcatcatcttttggctccagggcaaattttcagccacctttttcc
tctatggattcatcttattctgcttccagggccaatttgcagccacccttgccaggatat
gtaaagcaggcaaatgcagtttcacaagctcctccaatggccccctttcaagctcaacaa
ggaagttatgcagcacccacaccaacaccacctcccacttttcatcctcagcaaggaggt
tttgctcaacctccaccaatagccgccccttttggattgcattccagggatcaaatccaa
catccaggctctgcacctcctataggtggcatccaagggttggctgaagatttcggatca
ctttctatcggatctgttcctggcacaatagattcagggcttgatccaaaagcattgccg
aggccattggatggtgatgtggagccaaattcgctgggagaagcatactccatgaattgc
aatcctagatatcttcggcttaccacttctgctattccaagttctcaatctttgctctca
aggtggcattgtcctcttggagcagttgtttgccctcttgcagaagcaccagatggggag
gaggtaccagtaattaattttgtctcaactggcattattcgttgtagaagatgtcgcacg
tatgtaaatccctatgtgacatttactgattctggaagaaagtggcgatgcaacatctgt
gctctgcttaatgatgttcctggagactattttgctcagctagatgccactggcaggaga
attgatttgaaccagagacctgagcttataaagggtagtgtggattttgttgcaccaact
gaatatatggtgcggcctccaatgccaccactatatttctttctcattgatgtttcagta
tctgctgttagaagtggtatgattgaggttgtggcccaaactatcaagtcctgtttggat
gagttaccaggctttcccagaacacaggttgggtttatcacctttgacagcgcgatacat
ttttacaacatgaagtcatcattgacacagcctcaaatgatggtggtcacagatctggat
gacatatttgttcccttgccagatgatctcctcgttaacttgtccgagtcaaggcttgtg
gtggaagcttttctcgatagcttaccctccatgtttcaggacaatatgaatatggagtct
gctcttggccctgctgtaaaagcagctttcatggttatgagccagcttggtgggaaactg
cttatttttcagaatacaatgccatctcttggtgtaggccgtttaaagttgcgtggagat
gatcttcgtgtttacggaactgataaagagcatgctttaagaactccagaagatccattc
tataaaaacatggctgctgaatgtaccaagtaccagataggagttaatgtgtatgccttc
agtgataaatatatcgacatagcctccttaggagctctagcaaaatattctggagggcag
gtatattactatccaagtttccagtcagcctctcatggagagaagttgagacgcgagttg
gctagagatcttacaagagaaactgcttgggaagctgtcatgcgcataagatgtggaaaa
ggtattcggtttacatcttaccatgggaacttcatgctaaggtccactgatttgttagcg
cttccagctgttgattgtgacaaagcatacggggcgcagttgtcacttgaagagacatta
ctcacaagtcagacggtatatttccaagttgctttgctatacactgcttcatgtggagag
aggcgtatcagagtacacacagcagcagtgcctgtggttacagatttgggggagatgtac
cgccaggctgatgctggtgctattgtgtctttgtttgccaggctagcaatcgagaaatca
ttgtcccacaagctggaagatgcacgaagctctgtacagttgaggattgtgaaagctctt
agagaatttcgaaatctatatgctgttcaacatcgcttgggaggcagaatgatatatcca
gaatctctgaagttattgcctttgtatggattagcacttagtaaatcagcggctctccgg
ggaggttacgctgatgttcaacttgatgatcgctgtgcagcaggattcactatgatggcg
ttacctgtaaaaaaattgttgaagcttttataccctagcttgatacgagtagatgaatat
cttttgaagccatctgcacaaactgacgaattcaaaaacatcatgaaaaggttaccattg
acagccgagagcttagactccagaggcctttatgtctatgatgacggttttcgctttgtt
gtatggtttggtagaatgctttcacctgatttagcaatgaatttacttggacaagatgct
gctgctgagttctccaaggtttctttcggtaagcatgatactgaaatgtcaagaaagtta
atgggggtgcttaggaaattaagagagagtgatccttcatattatcagctttgcaatctt
gtgagacaaggtgaacagcccagagaaggtttctttcttctcacaaattttgtggaggac
cagattgggggtaccagtggttatagtgagtggatggtgcaaatacatcggcaggtccaa
caaaatgcataa
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