Populus trichocarpa (black cottonwood): 7470745
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Entry
7470745 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: carotenoid 9,10(9',10')-cleavage dioxygenase 1
Organism
pop
Populus trichocarpa (black cottonwood)
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Gene cluster
GFIT
Motif
Pfam:
RPE65
Motif
Other DBs
NCBI-GeneID:
7470745
NCBI-ProteinID:
XP_052310055
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Position
6:24123242..24131237
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AA seq
633 aa
AA seq
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MTNTSTMAFHVNCSVQRRRPSLFQNIDRFKTSLSSSYKPLLKELKQLSLQLEVSQIMKNA
SVKLLDAFVDSMFQFADQPILPSQSNFAPVDELNEPFVITSIEGKIPDDFPEGVYIRNGA
NPLFGGLKSTTSMFGKTGHIWIEGEGMLHALYFDKDSGIGSWTVLYNSRHVETETFKVEK
KRNKPSFLPAIEGSSPAILIACLLNMLRFGKVNKDLSNTNVFEHSGKFYSIAENHLPQEI
DIFSLQTLGDWDINGAWHRPFNSHPKTAPGTGELVVFGVDAIKPYMEVGVVSADGKRLVH
KVDLKLNRCPLSHDMGVTERYNVIMDFPLTIDLHRLIKGGPLIKFDNEDYARIGIMPRYG
DVDSVRWFEVEPNCTFHILNCFEEGVEVVVRGCRSLESIISKSYGMDLEESEWVSGRLRS
KEHVEQNTTPSSNDELLFSRSYEWRLNMETGEVKERNLTGTELCMEFPMINPSLNDLKNK
FGYTQIVHEPASSSSGMPKFGGLAKLYFDETSSKQSEGHIKVEYHEFEGNTFCTGSAFVP
KEGGLEEDDHGWIITFVHDEDTNTSKVYIIDTKNFTSEPVAKITLPYRVPYGFHGAFMPI
PSRNELYNTSHINFVEKLTDLTRTLDAIKFKGF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatacatcaacaatggcttttcatgtgaattgctctgtacagaggaggcgccct
tctctcttccaaaacattgatcgttttaagactagtttgtcttcatcttacaagccatta
ttgaaagagttgaagcaactttccttgcaacttgaagtttcccaaattatgaaaaatgct
tcagtcaaacttttggatgccttcgtcgattcgatgttccagtttgctgaccagcccatt
cttccttctcagagtaactttgcaccagttgatgaattgaatgaaccttttgttataacc
agcatcgaaggcaaaatcccagatgattttccagaaggtgtctacataagaaatggagca
aatccactatttggtggtctaaaatctacgacctccatgtttgggaagacaggtcacata
tggatagaaggagaaggaatgcttcatgctttatactttgataaagatagtggcattgga
agctggacggtcctttataacagtagacatgttgaaaccgaaaccttcaaagtggagaaa
aaaagaaacaagccatcttttcttccagccatagaaggcagttctccagccattttgata
gcttgcttgttaaatatgctgcgatttggaaaggtcaacaaagaccttagcaacaccaat
gtttttgagcattcggggaagttctactcaattgctgaaaatcaccttccccaagagatt
gacatcttttcccttcagactctaggcgattgggatatcaatggagcctggcatcgacct
ttcaactcccacccaaagacagcaccaggtactggagagttggttgtatttggggtggat
gcaataaaaccttacatggaagtgggagtcgtttctgctgatggaaagagactagttcac
aaggttgatctcaagttgaacaggtgcccccttagtcatgacatgggggttacggagagg
tataatgtaatcatggattttccactaacaatagacttacacagactcatcaaaggcggc
ccattaataaagtttgataacgaagattatgcaagaattgggattatgccccggtatggt
gatgtggactcggttcgttggtttgaggtggaaccaaattgcacatttcacattcttaat
tgttttgaggaaggagttgaggttgtagtgaggggatgcaggtcccttgaatcaattata
tcaaaatcttacggtatggatttggaagaatctgagtgggtttcaggaagactaaggagt
aaagaacatgttgagcagaatactacaccttcgtcgaacgatgaattattgttcagtcga
tcttatgaatggagattaaacatggaaaccggagaggttaaggagagaaacctcactgga
actgaactttgtatggagtttcctatgatcaatccaagtctcaatgacttaaaaaataaa
tttggctacacccagatagtccatgaaccggcaagtagttcatcaggcatgccaaaattt
ggaggtctagccaagttgtactttgatgaaacttcgagtaagcaatcggaagggcatata
aaggtggaataccatgaattcgagggaaacaccttctgcactggatctgcctttgtccct
aaagaaggtggtctagaagaagatgatcatggctggatcatcacttttgttcatgatgaa
gacactaatacatccaaagtttacataattgacacaaagaacttcacaagtgagcctgtt
gccaaaattacattgccatacagagtcccatatggatttcatggagcatttatgccaatt
ccatcgcgcaatgaactgtacaacacaagccacattaactttgtggagaaattaaccgac
ttgaccagaaccttggatgcaattaagtttaaaggattttag
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