Populus trichocarpa (black cottonwood): 7471701
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Entry
7471701 CDS
T01077
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7471701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7471701
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7471701
mRNA degradation factors
5'-3' decay
Decapping complex
7471701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
DUF445
Motif
Other DBs
NCBI-GeneID:
7471701
NCBI-ProteinID:
XP_024455167
LinkDB
All DBs
Position
1:49334003..49342025
Genome browser
AA seq
1383 aa
AA seq
DB search
MASPNPQHQHQQPQPQPQPPPFDMHKFFMPTSTPPPPQNPSSSPSPPPPNLIMIPPPQQI
PSSYPPSTGTHHFPHYPNFPFPFPPQQQQFQPPYPLQQNPNPSNPPPLANPQRSLSYPTP
PLTPNQQLQDRSGAEIMALLRTPQNQEPPPIPPPAAPAQDFSGAVNNSNNIFSGPIRMPS
STSSKMPKGRRVAGENVVYDVDVRLQGEAQPQLEVTPITKYFSDPQLCLGRQIAVNRTYI
CYGLKQGNIRILNINTALRSLFRTHSQRVTDMAFFAEDVHLLASAGIDGRINVWKISEGP
DVEDKPQITAQTIIAVQIVGEGEIKNPRVCWHCYKQEILVVGVGKRVLRIDTNKVGKGEV
YSSEAPLQCTVDKLIDGVQFVGKHDGEVTDLSMCQWMTTRLVSASMDGTIKIWEDHKASP
LVVLRPHDSQPVYSATFMTATDRPDHIILVTAGPQNREMKIWASASEEGWLLPNDSDLLN
CTQTLELKSSAEPRAEEAFFNQVVALSQMGLILLANAKRSAIYAVHLDYGPNPASTSMDY
ISEFTVTMPILSLTGTSDVVHGQSVAQVYCVQTQAIQQYTLELCQCLPPLMENVGSERSD
SSVLHGVPNADGYAALESHGRKYSDVLMSSTSVDVTTPQQDTPASNMDPRTIASNMSSST
SDADIVCVPSPPLPLRPRLSRGLAEFAVGGMFEPSPASSNQGFNQPAIDYSVDQQMDTIC
SNLSDVPSLDGDSRNEKIVQDNSTTLNPPVTFKHPTHLITPSEILMGASSSEITNVNEGK
SEVDSNVQDVVVNNDVVNAEVEVKTVGETIATRDDGFSLRGESKRPVFENKEKIFCSQAS
DLGVEMTRECCALQPDKNIEESGQVDGVGISESLAPPSHAGGDEVHDSTKDISGKVSEST
VSTVVPLSTTPSTKGKKQKGKNSQASGSSSQSPPAFNSTDSLNEPVGASNLLSVEGAFPR
FLAMQEAINQLVITQKEMNKQMSNMVAIPVSKECRRLETTLGRNIEKAIKANTDALWARF
QEENAKNEKLLRDRTQQITSLILNFINKDLAAMLEKALKKELASVGQGVVRTISPVIEKT
VSSVIVESFQRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQALQDSLKAGLEAS
VIPAFEMSCKAMFDQVDAAFRKGMVEHTATTQQHFESAHSSLALTLRDSINSASSLTKTL
STELADSQRQLLAIAANSGATNSLATQPSNGPLASFHEKVETPLDPTKELTRLISEQQYE
AAFTIVLQRSDVAMVSWLCCQVDLQGIMAMSPPPLSQRVLLALLQQLACDISKETPRKLE
WMTVVAAAIQPTDQMIAYYARPIVEQVCEILNQLRRSAGVTGADITSIRILMHVVNYLLV
TCK
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcatccccaaatccccaacatcaacatcaacaaccgcaaccacaaccacaacctcct
ccttttgacatgcacaagttcttcatgcccacatccacaccaccaccacctcaaaaccct
tcttcctccccttctcctcctcctcccaatctcatcatgattcctccaccccaacaaatc
ccttcttcttaccctccatccactgggacccaccacttccctcactaccccaacttcccg
tttcccttcccaccccaacaacaacaatttcaacctccttaccctctccaacaaaaccct
aaccctagcaacccacctcctcttgctaacccccaacgttccctctcttatcccacaccc
cctctcaccccaaaccaacaactccaagaccgttctggtgccgaaatcatggcactcctc
cgcacccctcaaaatcaagaacccccaccaatcccaccgccggccgcgcctgcgcaagat
ttttctggagctgttaataatagtaataatattttttcggggcctattaggatgcctagc
agtactagtagcaagatgcccaagggaaggagggtagcgggtgaaaatgtagtgtatgat
gtggatgttagattgcaaggagaggcgcaaccccagcttgaagttacgcctataactaag
tacttttctgatcctcagctgtgtttaggaaggcaaattgctgttaataggacttatatt
tgttatgggttgaagcaagggaatattaggattcttaatattaataccgcgctgaggtct
ttgtttcggacacattctcagagggtcactgacatggctttttttgccgaggatgttcat
cttttggctagtgctggcatagatggacggattaatgtctggaagatctctgaaggtccg
gatgtggaagataagccacagattacagcacagacaattattgctgtccaaatagttggt
gagggggaaattaaaaacccaagggtttgttggcattgctataaacaggaaattttggtt
gttggagttggtaaacgagttctgagaattgacactaataaagttggaaagggcgaagtc
tattcatctgaggcacctcttcaatgtactgttgacaagctgattgatggggtccaattc
gttggtaaacatgatggagaagtcactgatttgtcaatgtgccaatggatgaccacccgt
ttggtatctgcttctatggatggcacgataaagatttgggaggatcacaaggcatcgccc
cttgtggttttgagaccgcacgatagccaacctgtttattcagccacgttcatgactgct
actgaccggccagatcacatcatacttgtcacagcagggcctcagaacagggaaatgaag
atttgggcctcagctagtgaagaaggctggctcctgcctaatgattctgatttgttgaat
tgcacccagacattagagctgaagagttcagctgaacctcgagctgaggaggcattcttc
aatcaagtagtagcgttgtctcaaatgggccttattttacttgcaaatgcaaagaggagt
gctatatatgctgtgcatttagattacggtcctaatccagcatcaactagtatggactac
atatcagagtttactgtcactatgcctattttgagtttaactgggacaagtgacgttgtg
catggccaatctgttgctcaagtttattgcgtacagacacaggcaattcaacagtatact
ttggaattatgtcagtgcctgccacctttgatggaaaatgtgggttcagagaggtcagat
tccagtgttttacatggtgtgcctaatgctgatggatatgctgccctggagtcacatgga
cgtaaatattctgatgttcttatgagctccacatcagttgatgtgaccactccgcaacaa
gatactcctgcttcaaatatggaccccagaactattgcttcaaatatgtcctcatcaact
agtgatgctgatatagtttgtgttccatcacctcctcttcctttgagacctagattatct
agaggtcttgctgagtttgcagttgggggaatgtttgagccaagtcctgcatccagcaac
caaggttttaatcaaccagctatcgattattcagttgaccagcaaatggacacaatttgt
tcaaatttgtccgatgtgccttccttggatggtgactcgaggaatgagaaaattgtacaa
gataattctaccactcttaatcctcctgttacatttaaacacccaactcatctaataacc
ccttctgagattttaatgggtgcttcatcctctgaaattaccaatgttaatgagggcaag
agcgaggttgactcaaatgttcaagatgtggttgtaaataatgatgttgtcaatgctgag
gtggaagttaaaacagttggtgaaacaatagccactcgagatgacggatttagtcttcga
ggggaatccaaaaggcctgtttttgaaaacaaggaaaaaatcttttgctcccaggcatca
gatcttggtgttgagatgactagagagtgttgtgcattacagccagacaaaaatattgag
gaaagtggacaagttgatggtgttggcattagcgagtctcttgccccaccttctcatgca
ggtggggatgaagtccacgactcaacaaaagatatatctgggaaagtttctgagtccact
gtgtcgacagttgttccactgtcaacaactccaagtacaaaagggaagaagcagaagggg
aaaaattctcaagcatcaggttcatcttctcaatctccacctgcctttaattcaacagat
tctttgaacgaacctgtcggggcttcaaatctcctctccgtggagggtgcctttcctcgg
tttttggctatgcaggaggcaattaatcagctagtgatcacacaaaaggaaatgaataag
cagatgtcaaatatggttgcaattcctgtttctaaagaatgtagaagactagagaccact
ttggggcggaacattgagaaagccatcaaagccaatactgatgcattgtgggctcgattt
caagaagagaatgcaaagaatgagaagttattgcgagatcgcacacagcagataacaagt
ttgatcttgaattttatcaataaggacttggcagccatgttagagaaagcactgaagaag
gaattggcttcagttggacaaggtgtagttcgcacaatatctccagtcatcgagaaaaca
gtatcttctgttattgtcgagtctttccagagaggagttggtgacaaggcagtgaatcaa
ctggagaaatcagttaactcaaaacttgaggctactgttgctaggcaaatccaagctcag
tttcaaacttctggcaagcaagctctccaggattccttgaaggctggtctggaagcgtca
gtaatccctgcctttgagatgtcttgcaaagctatgtttgatcaagtagatgctgccttt
cggaaagggatggtcgagcatacagctacaacccagcagcattttgaatctgcacattct
tcattggcactcactttaagggattccatcaactcagcatcatcattgacgaaaaccttg
agtacagagttggctgatagtcaaagacagctgttagctattgcagcaaactcaggtgca
acaaattcgttggctacacaacctagcaatggacctttggctagcttccatgagaaggtt
gaaacacctttggatccaacaaaagagctaacacgattaatatctgaacaacaatacgag
gcggcattcactattgtgctacaaagaagtgatgtggccatggtatcctggctgtgttgt
caggttgatctgcagggtatcatggctatgtctcctcctccactaagccaaagagtatta
ctcgcacttctacagcagctagcctgtgatataagcaaagagactcctcgaaagcttgag
tggatgacagtggtggcggctgccatacagccaacagaccaaatgattgcttactatgca
cggcctattgtcgagcaagtatgtgagattttgaaccagctaaggagatcagctggcgtt
actggcgctgacatcacaagcatccgtattctcatgcatgtcgttaattacttgctggtg
acctgtaaatga
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