Populus trichocarpa (black cottonwood): 7471744
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Entry
7471744 CDS
T01077
Name
(RefSeq) SWI/SNF complex subunit SWI3B
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7471744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7471744
03036 Chromosome and associated proteins [BR:
pop03036
]
7471744
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
7471744
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
7471744
PBAF complex
7471744
GBAF(ncBAF) complex
7471744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
SWIRM-assoc_1
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
7471744
NCBI-ProteinID:
XP_024450772
LinkDB
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Position
2:276023..280010
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AA seq
562 aa
AA seq
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MHTKLRRFNGSRTAYHSLSSKGRSLLVKNIKERNYDSLNNSHLQQHPSALSLSLIGAPIT
AVMASVSPAPPSLHPKIPLSSTVKPEIQPPTTAAPSPRPPQPPPPSSEPDVVHIPSYSRW
FSWDNIHECEVRFLPEFFDSRSPSKNPSVYKYYRNSIISQFRKNPSAKLTFTEIRKTLVG
DVGSIRRVFDFLDAWGLINYSPLNKQLKWEDGKDSSSKTAASPAGGGGGDGGTAGDANAS
NTKDNCKRLCSGCKSLCSIACFFCDKYDITLCARCYVRGNYRVGVSSSDFRRVEISEEAR
TDWTEKETLQLLEAVMHYRDDWKKVAQHVGGRSEKDCITHFIKLPFGEVFTDYTDVGDVD
SKYNQIKDCDDDESGRNGNGSPSTSKKIRLSPLVDASNPIMAQAAFLSALAGTEVAEAAA
RAAVTTLTEVEYGGSKGSLEFVSRVTKHLDSGVASNGDTNLSASVKACLDANSLLEKEES
DVERAISRITEVQMKEIQDKILRFEELDLQMEKEWQQLDQMKNLLFADQLSVLSKRSVTT
KIDERGSTLKAEERGDENAKTD
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccaaactacgtcgctttaacgggagcagaacagcataccactctctatcctca
aaaggaaggagcctgctcgttaaaaacataaaagagagaaattacgactcgttaaacaat
tcccaccttcagcaacatccgagcgctctctctctctctctcattggagcgcctataaca
gcagtcatggcctcagtatcacccgcaccaccatctctccaccccaaaatccctctatcc
tctaccgtcaaacctgagattcaacctcccacaaccgccgcaccttctccccgaccacca
caaccacctcctccctcctccgaacccgacgtcgtccacatccctagctactcccgctgg
ttttcatgggacaacatacacgaatgcgaggtccgattcctcccagaattcttcgattcg
cgatcgccttcgaaaaaccctagtgtttacaagtactacaggaactcaatcatctcccaa
ttcaggaaaaacccttccgccaaactcacttttactgaaatcaggaagactctcgtaggc
gatgtggggtccattcgtagggtttttgatttcttggatgcttggggtttgatcaattac
tcccctttgaataagcaattgaagtgggaagatggcaaggattcttcttccaagactgct
gcttcgcccgccggtggtggtggtggtgatggagggactgccggtgatgctaatgctagt
aatactaaggacaattgtaagagattgtgcagtggttgtaagtctctctgtagcattgct
tgcttcttttgcgataagtatgatataactctttgtgcccggtgctatgtgcgtggaaac
tatcgggttggtgtcagttcatcggatttcaggcgggtggagataagtgaagaggcaagg
acagattggacagagaaagagactttgcaacttcttgaagctgttatgcattatagggat
gactggaagaaggttgcgcaacatgttggtggtagaagtgagaaggactgcattactcat
tttatcaagcttccttttggagaggtttttactgattatacagacgtaggggatgttgac
agcaagtataaccaaataaaggactgtgatgatgatgaatctggacgaaatggtaatggt
tctccatccacaagtaaaaaaatacgtctctcacctcttgtggatgcaagcaacccaata
atggctcaggctgcttttttatcagctttggcgggcacagaggttgcagaagctgcggct
cgagcagctgtaactactctgactgaggtggaatatggaggaagtaaaggcagtcttgaa
tttgtttccagggttacaaaacacctagattctggtgttgcatcaaatggtgacaccaat
ctaagcgcttcagtaaaagcttgtttggatgcgaattcacttctggagaaggaagagtcg
gatgtggagagagcaatttccaggattacagaagttcagatgaaagagattcaagataag
attcttcggtttgaggagttggatttgcagatggagaaagagtggcagcagctggaccaa
atgaagaaccttctctttgctgaccagctcagcgttttatctaaaagaagtgtaacaaca
aaaatcgacgaacgtggttcaacactgaaagcagaggaacgaggggatgaaaatgcaaaa
actgattga
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