Populus trichocarpa (black cottonwood): 7473042
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Entry
7473042 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7473042
KO
K11273
chromosome transmission fidelity protein 1 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7473042
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7473042
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
7473042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-GeneID:
7473042
NCBI-ProteinID:
XP_002299703
UniProt:
B9GG23
LinkDB
All DBs
Position
1:complement(16116010..16121954)
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AA seq
918 aa
AA seq
DB search
MEFRGFPYKPYSIQIDFMKALYHSLNQGGVSILESPTGTGKTLSIICSALQWVYDRRQQD
KSKVQVQSPHHSTDDAHIGSDDEPDWLRNFVPNKDNLTQEKKINKKFGFGGCDRRRNRKE
SCKDLFSRDLEEEDCNKRGENKCSRKKNDGVELSDDEFLLDEYESEEEGALGGGKSKRKA
GGVSISSSSDEEGEKDGPDGEEEEEEKAFKIYFCSRTHSQLSQFIKELRKTLFSNEINVV
CLGSRKNFCINEEVLKLGSSVRVNERCLELQKNKKNEVSKIKNFSAEGRIRRTKASSGCP
MLRKHKLQKEFRNETSQHGALDIEDLVRIGRSIGTCPYYGSRSMVPAADLVVLPYQSLLS
KSSRESLGLNLKNSIIVIDEAHNLADSLISMYDAKITSSQLESVHSHIEKYFTRFRNLLG
PGNRRYIQTLMVLTRAFLQTLDNKKDLSNVNNYQAEEIAADMKAVCDTSIAINDFLFSLN
IDNINLVKLLQYIKESNLVHKVSGYGEKVASLQEGLALNRNGEFGEEGSTLSSFRALVDM
LMSLTNNDGDGRMIISKMRSTCSGLQGGFLKYVMLTGEKIFSEIVDEAHAVILAGGTLQP
IEETRERLFPWLPPNQLHFFSCSHIVPPESILPIAVSRGPSGQSFDFSYSSRSSLVMIEE
LGLLLCNLVAFVPEGIVVFFSSFEYEGQVYDSWKKSGILERIMRKKRIFREPRSNSDVEL
ILKEYKETIDGLSSGTKEDGVRHNGAVLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSP
SDMELMERVKYIESLGEPNCGKRPEISVGEHYYNGDVQTAFSILRSCRRRGKEYYENLCM
KAVNQSIGRAIRHINDYAAILLVDMRYASDSSKTSFSHPTNKLPLWIKDRLVSATNNYGE
VHRLLHQFFKYNKKRECQ
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggaatttagaggatttccttacaagccttactccatccagattgatttcatgaaagct
ctttatcactccttgaatcaaggcggcgtctccatcctcgagagccccaccgggaccggc
aagactctgagtataatatgcagtgctttgcaatgggtgtatgataggaggcaacaagac
aagtccaaagtacaagttcaatctcctcatcattcaacagatgatgcgcatattggctct
gatgatgaacctgactggctcagaaactttgtccccaacaaagacaatcttacgcaggag
aagaaaatcaacaagaaattcggttttggaggatgtgataggaggagaaatcgcaaggaa
agttgcaaagacctgttttcacgtgatttggaggaggaggattgtaataagaggggtgag
aataagtgttcgcggaagaaaaatgatggagtggaattgagtgatgatgagtttttgtta
gatgagtatgaaagtgaagaggaaggagctcttggaggtgggaaatcaaagaggaaggct
ggtggggtttctattagttcatctagtgatgaggaaggagaaaaggatggccctgatggt
gaggaggaagaggaggagaaggcgttcaagatttacttttgtagtcggacgcattcacaa
ctctcacagtttatcaaagagttaaggaaaactcttttttccaatgaaataaatgttgtg
tgtttgggctccaggaagaatttctgcattaacgaagaggttttgaaacttgggagctct
gtgcgtgttaatgaaaggtgcttggagcttcagaagaacaagaaaaatgaagtctccaaa
atcaagaatttcagcgctgagggaagaatacgtcgaaccaaggcttcttctggctgtcca
atgcttagaaaacataaactacagaaggaatttaggaatgagacatctcaacatggagca
ttggatattgaagatcttgttcgcattggaagaagtattggaacttgtccatattatggc
tcccgaagcatggtcccagcagctgatcttgttgttctcccctatcagtctcttctatca
aaatcatctcgtgaatcgcttggcctcaatttaaagaatagtatcatagtaatagatgag
gctcacaatctagctgactccctcatcagcatgtatgatgcgaaaataacttcatcacag
ttggagagtgtgcactcccacatagagaagtacttcacaagatttcgcaatctcttggga
cctggcaatcgaagatatattcaaactttgatggtcctcactcgagctttcctgcaaact
ctagataacaagaaggatttgagtaatgtaaataattaccaagctgaagaaatagctgct
gacatgaaagctgtctgtgacacttctatagccattaatgattttctattttctctcaat
atagacaacattaatttggttaaattgctacagtatataaaggaaagcaatttggtgcac
aaggtcagtgggtatggtgaaaaggtagctagcttgcaggaaggtttggctctcaatcgt
aatggagaatttggtgaggaaggaagcactctttccagtttccgggcattagtggacatg
ttgatgtcactgacaaataatgatggtgatggacggatgataatctcaaaaatgagatca
acatgctctgggctacaaggaggtttcttaaaatatgttatgctcacaggggaaaagatt
ttctccgagattgtggatgaagcacatgctgtcatattggcaggtgggaccctgcaaccc
atagaagagacaagggagcggctgttcccatggttaccgccaaatcagctgcatttcttt
tcatgtagtcatattgtccctcctgagagtattttaccaattgcagtttcacgtggccct
tctggtcaatcttttgattttagctacagctcgagaagctcattggttatgatagaggag
ttagggctcttgctttgcaatttggtggcatttgttcctgaagggattgttgtgttcttc
tcctcatttgaatatgaaggacaggtctatgattcatggaagaagtcgggcattcttgaa
aggattatgaggaaaaagcgtatattcagagagccgagaagtaactctgacgtggaactc
atcctcaaggaatacaaggaaacaatcgatggattgtctagtggcacaaaagaagatgga
gtacgtcataatggtgcagtactcctagctgtagttggtggaaagatatcagaaggcata
aacttcagtgatgggatgggccgatgcatagtaatggttgggctgccctacccaagtcca
tctgacatggagttgatggagagggtgaagtatattgaaagtttgggagagccaaactgt
ggtaagcgtcccgaaatttctgttggtgagcactattacaatggggatgttcagacagct
ttcagtatcctaagaagttgcaggcgcagaggaaaagaatattatgaaaatctctgcatg
aaagctgtaaatcaatcaattggaagagcaatacggcacataaatgactatgcagcaata
ttgttggttgacatgcgatacgcatcagactcctcgaaaacaagcttctctcatccaaca
aacaagcttcctctgtggataaaagatcgtcttgtttctgcaaccaacaattatggtgaa
gttcataggctactgcatcaattcttcaaatacaataagaagagagagtgtcaatag
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