Populus trichocarpa (black cottonwood): 7474422
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Entry
7474422 CDS
T01077
Name
(RefSeq) clathrin heavy chain 1 isoform X2
KO
K04646
clathrin heavy chain
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
7474422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7474422
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7474422
Membrane trafficking [BR:
pop04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
7474422
Exosome [BR:
pop04147
]
Exosomal proteins
Proteins found in most exosomes
7474422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
Totivirus_coat
Motif
Other DBs
NCBI-GeneID:
7474422
NCBI-ProteinID:
XP_002316201
UniProt:
B9HSM0
LinkDB
All DBs
Position
10:complement(18351317..18362345)
Genome browser
AA seq
1705 aa
AA seq
DB search
MAAANAPITMKEVLTLPAIGISPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQ
PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEMKAKMKSYQMPEQIVFWKWI
TPKMLGLVTQTSVYHWSIEGDSEPVKMFERTANLQSNQIINYKCDPSEKWLVLIGIAPGS
PERQQLVKGNMQLFSVDQQRSQALEAHAASFAQYKVPGNENPSTLISFATKSFNAGQITS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYAITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASTVGGFYAINRRGQVLLATVNEAMIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
PGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECTEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYAPDYLFLLQTILRTDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLAEHGYLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYTDLPDIKRVIVNTHAI
EPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVDACVKLFEQFK
SYEGLYFFLGSYLSSSEDPDIHFKYIEAAARTGQIKEVERVTRESNFYDPEKTKNFLMEA
KLPDARPLINVCDRFGFVADLTHYLYSSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECAE
DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNKNSLFKLQARY
VVERMDGDLWEKVLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIQSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSEAIE
SFIRADDATQFLEVIRAAEDANVYHDLLKYLLMVRQKTKEPKVDSELIFAYAKIDRLSDI
EEFILMPNVANLQNVGDRLYDEALYEAARIIFQFIANWAKLASTLVKLKQFQSAVDAARK
ANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGYFNELISLMESG
LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL
ALRVDHTRVVDIMRKAGHLLLVKPYMIAVQSNNVSAVNEALNQIYVEEEDYERLRESIDL
HDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELAWMNNMIDFAFPYLLQFIREY
TGKVDELVKYKIEAQKEVKAKEQEEKDVIAQQNMYAQLLPLALPAPPMPGMGGPTMGGGF
APPPPMGGMGMPPMPPFGMPPMGSY
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggctaacgccccgatcaccatgaaggaagtcttaactttaccggctatcggg
attagtcctcagtttattacgtttacaaatgtaacgatggaatcagacaagtatatatgt
gtacgggaaacagcgccacaaaatagtgttgtaattatcgatatgaacatgccaatgcag
ccattgagacgccctatcactgcagattctgctctcatgaatccaaattctagaatcctt
gctttgaaagcccaacttccgggaactactcaggatcacttacaaatatttaacatcgag
atgaaagcaaaaatgaaatcataccagatgcctgagcagattgtcttttggaagtggata
acccctaagatgctgggcctggttacacagacatcagtttatcattggtctattgaaggt
gattctgaaccagtgaagatgtttgagagaactgctaatttgcaaagcaatcagattata
aactacaaatgtgacccttctgagaaatggttagttttgattggaattgctcctggctca
cctgagcggcaacaattggttaaagggaacatgcaacttttctctgtggatcaacaacgt
agccaagctcttgaagcacatgctgcatcatttgcacaatataaggttccaggaaacgag
aacccttccactctgatttcttttgccacaaaatcttttaatgctgggcagattacatcg
aagttgcatgttattgagcttggtgcccagccagggaagccatcatttacgaagaaacag
gcagatctgttctttcctcctgattttgctgatgactttcctgtggcaatgcagatatcc
cacaaatacagtttgatttatgcaatcacgaagcttgggctgctatttgtttatgatttg
gagacagctactgcagtataccgaaacagaattagtccagatccaatatttttgacagct
gaggcttcaacggtgggagggttttatgccattaataggcgaggccaggtgttgttggct
actgtaaatgaagcaatgattgtgccatttgttagtggccagttgaataatctggagctt
gctgtcaatctagccaaaagaggaaaccttcctggtgctgagaatctggttgtccagcgt
ttccaagaattattcgctcaaacaaagtataaagaagctgctgagcttgctgctgagtca
ccacaaggcattcttcgaactcctgacacagttgccaagtttcagagtgttccagtgcaa
cctgggcaaacccctcccttattgcaatactttgggacccttttaactagaggaaagctt
aatgcatttgagtcattggaattgtcccgccttgtggtcaatcagaacaaaaagaatctt
ttggagaactggttggcagaggacaagttggagtgtactgaggaactgggagaccttgtg
aagacagtggataatgatcttgctctgaaaatatatattaaagctagggcaacccctaaa
gttgttgcagcttttgctgagagaagggagtttgacaaaattttgatatactcgaagcag
gttggctatgctcctgactatttattccttctgcaaacaattctccgtacagatccacag
ggtgctgttaactttgctttgatgatgtcccaaatggaaggtggctgtccagttgactac
aataccattactgatctctttcttcagaggaacttgatccgtgaggcaacagcctttctg
ttggatgttttgaagccaaatttagcagagcatggttacctccaaacaaaggttctggag
ataaatctggtaacatttcctaatgtagctgatgctattctagccaatgggatgtttagc
cactatgatcgtcctcgtattgctcaactctgtgaaaaagctggtctttacatccgagcc
ctgcagcattatacggatttgccagatattaaacgtgtgatcgtgaatacacatgcaata
gagccacaggcacttgttgagttttttggcactctttcacgagaatgggctctggagtgc
atgaaggatctcttactggttaatctaagaggcaaccttcagataattgttcagactgcc
aaggaatattgtgagcagttgggtgttgatgcatgcgtaaaacttttcgaacaattcaaa
tcatatgaagggttgtactttttcttggggtcatatttgagttccagcgaggatcctgat
atacattttaagtacatcgaggcagctgctagaaccggacaaataaaggaggttgagcgt
gttactagggagtcaaatttttatgatcctgaaaagacaaagaactttctgatggaagcc
aagcttccggatgcaaggcctctaataaatgtctgtgaccgttttggttttgttgctgat
ctcacacactacctctattcaagcaacatgcttcgttatatagagggttatgttcaaaag
gtgaacccagggaatgctcctttagttgtcgggcagctgttagatgatgaatgcgccgaa
gactttatcaagggccttattctttctgtccgttctttgcttccagttgagccccttgtg
gaggaatgtgagaagagaaatcgacttcgtttgctcactcagttcttggaacatcttgtg
agtgagggaagccaagatgtacatgttcacaatgctcttggtaaaatcatcattgatagc
aataacaacccagaacacttcctcaccaccaatccttactatgattcccgggttgtgggc
aagtattgtgagaaacgtgatcccacccttgctgttgttgcttaccggagaggacaatgt
gatgaagaactcatcaatgtcacaaataagaactctttgttcaagttgcaagccagatat
gtggttgaaaggatggatggtgatctttgggagaaggttctgaatcctgaaaatgaatac
cgaagacagcttattgatcaagttgtatctactgctttgccggaaagtaagagcccagag
caagtttctgctgctgttaaagctttcatgactgctgatctgccccatgaattgattgag
cttcttgagaagattgtgctccaaaactctgcattcagtggaaatttcaatctccaaaac
ctacttatcttgacagcaattaaggctgatccttctagggttatggattacattaataga
ttagataactttgatggacctgctgttggggaagtggcagttgaagctcagctttacgag
gaagcatttgcaattttcaagaagttcaacttgaatgttcaggctgttaatgttttattg
gataacatccaaagcattgaccgtgccgtggagtttgcattccgtgttgaagaagatgct
gtttggagccaggtggccaaggcccaactcagagagggccttgtgagtgaagcaattgag
tcatttattcgtgcagatgacgctactcaattcctggaagtcattcgtgctgctgaggat
gcaaatgtctatcatgatttgttgaagtaccttctcatggttaggcagaagacaaaagag
ccaaaggtggatagtgagcttatttttgcatatgcaaagattgataggttgagtgacatt
gaggagttcattctcatgccaaatgtggcaaatctccaaaatgttggcgatcgcttatat
gatgaagctctttatgaggctgcaagaattatattccaatttatagcaaactgggccaag
ttggcaagcacactagtgaagttgaaacagttccaaagtgctgttgatgcagctcggaaa
gccaacagtgccaagacatggaaggaagtttgctttgcttgtgttgatgcagaggagttc
cgtctggctcagatatgtggtcttaacatcattatacaggtggatgatttggaggaggtc
agcgaatattaccagaacagaggatacttcaatgaattgatctctctcatggagagtggt
ttaggtttagaacgtgcacacatggggattttcacagagttgggagtgctgtatgctaga
tatcgtcctgagaaactcatggagcacattaaattgttctcaacccgtctcaacattccc
aagcttatccgagcatgtgatgaacagcaacactggaaggaacttacctatttgtacatt
caatatgatgaatttgataatgctgcaactaccattatgaaccattctccggaggcatgg
gatcacatgcaattcaaagatgttgctgtcaaagttgctaatgtagagctatattataag
gccgtgcatttctacttgcaagaacatcctgatcttatcaatgatcttctcaatgtgctg
gcacttcgtgtggaccatactcgtgttgttgacattatgcggaaggctggtcatttgctt
cttgtgaagccatacatgattgcagttcagagcaacaacgtgtctgctgtgaatgaggct
ttgaatcaaatttatgtagaagaggaggactatgaaagattgcgtgaatcaattgatttg
catgataactttgatcagattggccttgcacagaagattgagaaacatgagcttcttgaa
atgaggcgtgtggctgcgtacatttacaagaaggcaggaagatggaagcaatccattgca
ttgtcaaagaaagataacctttataaagatgccatggagacagcatcacagtctggtgat
cgtgaacttgcagaggagttgctggtttatttcattgaacagggcaagaaggaatgcttt
gcatcgtgcctctttgtttgttatgatttgattcggccagatgttgcccttgagcttgcc
tggatgaataatatgattgactttgctttcccgtacctgttgcagtttatccgtgaatac
acaggcaaagttgatgaactcgtgaagtacaaaattgaggcgcagaaagaagtcaaggcc
aaagagcaggaagagaaggatgtaattgctcagcagaacatgtatgctcagttacttcct
cttgctttgcctgcaccgcccatgcctggtatgggtggaccaacaatgggaggaggtttt
gctccaccaccacccatgggtggaatggggatgcctccaatgccaccttttggcatgcca
ccgatgggcagctactga
DBGET
integrated database retrieval system
