Populus trichocarpa (black cottonwood): 7477029
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Entry
7477029 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP54
KO
K14308
nuclear pore complex protein Nup54
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7477029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7477029
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7477029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
CTD
Motif
Other DBs
NCBI-GeneID:
7477029
NCBI-ProteinID:
XP_002314540
UniProt:
B9HT86
LinkDB
All DBs
Position
10:complement(8926453..8931358)
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AA seq
384 aa
AA seq
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MFGTPSSTPAFGTPSSTPAFGTPSSTPLFGTPSSTPAFGTPSSTPAFGTPSTPAFASGGF
GSSLFSTPFTSQTQQQQQQQQQQQQQTPFFQQPSATGFGFQQQQQQTPFATPLQMTPFPT
PQLTTQMAPVAPLPFSLADRDIQAIVDAYKEEPGNPKYAFKYLLLSVTDPQHRVKPAGVS
EIMWAEAMAKLEGMDSADRERLWPQLVQGFKDLSNRLKLQDEVIVSDAERLRMTQSNVKM
LQRHFQAETLPWIERMRQKEQSLQRRLLRVMRIMEALEGKGCRLPLTKGEAELAEKLVAI
IRQLKGSGAEFSRRVHNLLTVSRVQANGIGAGGSLYLPGSTKIHEESLADMQEVLQQQTE
AIARLGNVLKRDIRDMEIMMAEDT
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgttcggtactccgtcttccactcctgcctttggcacgccgtcttccactccggcattc
ggcaccccctcttctactcccttattcggcactccatcttccacaccagcattcggcacc
ccatcttccacaccagcattcggcactccttcaacgccggctttcgcttctggaggattc
ggctcttctttgttctctactccatttacttctcaaactcaacagcagcagcagcagcag
cagcagcagcagcaacaaactccgttttttcaacaaccgtctgctactggtttcggattt
cagcagcaacagcagcagactccgttcgctacgccacttcaaatgacaccgttccctact
cctcaattgactactcagatggctccggttgctcctcttcctttctctctcgccgatcgc
gacattcaggcaattgtggatgcttacaaggaggagcctgggaaccctaagtatgcattc
aagtatttgctgttaagtgtaactgatccacagcatagagtgaagcctgctggtgtatca
gaaatcatgtgggcggaggctatggcaaagctagagggtatggacagtgcagatagagaa
cgcctttggcctcagcttgttcaaggtttcaaagatctttctaaccgcctgaagctccaa
gatgaagtaattgtttcagatgcagagagattgcgaatgacccaaagcaatgtaaaaatg
cttcaaaggcattttcaagctgagactcttccatggattgaaagaatgagacaaaaagag
caaagtcttcagaggcgtcttttaagggtgatgagaataatggaggcattggagggcaag
ggttgccgattgcccttaacaaaaggggaagctgaattggctgagaagttagttgcgata
atcaggcagctaaaaggatctggagcagaattttccaggagagttcataacctactcact
gtatctcgtgttcaagcgaatggaattggtgccggaggttctctttatcttccaggatca
accaaaatacatgaagagagtcttgctgatatgcaggaggttttacaacagcagactgaa
gctattgcaaggcttggcaatgtgttgaagcgggatattagggacatggaaattatgatg
gccgaggacacataa
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