Populus trichocarpa (black cottonwood): 7477107
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Entry
7477107 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7477107
KO
K15559
regulator of Ty1 transposition protein 103
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7477107
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7477107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CTK3
Laminin_I
DUF1598
UPF0242
TEX13
T4bSS_IcmS
FapA
THOC7
SOR_SNZ
CREPT
DUF3450
OmpH
AAA_23
IZUMO
Motif
Other DBs
NCBI-GeneID:
7477107
NCBI-ProteinID:
XP_024457898
LinkDB
All DBs
Position
5:5484996..5490418
Genome browser
AA seq
507 aa
AA seq
DB search
MNSAFSEQILADKLSKLNGTQQCIESLSRWCIHHRSEAELVVETWNKQFHNSDMLKKVPL
LYLANDILQNSKRKGNEFVAEFWKVLPAALKNVVEKGDDRDKNVVSRLVNIWEERTVFGS
HARSLREVMLGEDVPPPLELSKKRSRTVKNTKRDSRSIRTKFSIGGAAEKIVSAFNLMVS
EQPNEEAGMRNCKSAVRRVRNMEKDVDSACSNNDKDPKRKTLAKELEDNENLLKRSIEKL
KSAKASRAALVSQLEEALQEQESELEGVRTQIQDAQAQVEEASKMRRRLNGEVLKASGTT
TVPVDSNAKAGQTPKRTAAAIAAEVAEKLAASSSSQMIMHAVLSTFAAEEAKNAPKPETS
LPVSDPNVFMLAQPLTAPTTHSYQSVLFTQPTMQNQTPTTQSQFHILPNPSSQPYIQPGG
GIATPYAYGNFSVLPPGPPPPPPYKVSQTVPLAQQPSQMPQQQPLPVAQQEAPINQKQPR
SLTQQTLGANFRPQPPGLEYYGHPSHS
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgcatttagtgaacagatacttgcagataagctttccaagctcaacggcacc
cagcagtgtatcgagtctttgtctcggtggtgcatacatcaccgtagcgaagcagaatta
gttgttgagacatggaataaacagttccacaactcagatatgctcaagaaagtacctcta
ttgtatcttgcaaatgacatccttcagaacagtaagcggaaaggaaatgaattcgttgcg
gagttttggaaagttcttcctgcagcgctaaaaaatgtagttgaaaaaggtgatgatcgt
gacaagaatgtcgtctctagattggtaaatatatgggaagaaaggacagtatttgggtca
catgcccggagcctcagagaggtaatgcttggagaagatgtacctccacccttggagctc
agcaaaaaacgttcacgcactgtgaaaaatacaaagcgagattcacgatccattagaacg
aaattttccattggaggtgctgctgaaaaaatagtatcggcattcaatttgatggttagt
gagcagcccaatgaagaggcagggatgaggaattgcaagtctgcagttcgtcgtgtgagg
aatatggagaaagatgttgatagtgcctgtagtaataacgataaagatccaaaacgaaaa
acattggctaaggagctagaggataatgagaatcttttgaaacgaagtattgagaaactt
aaatcagctaaagcaagtagagcagcgcttgtctctcagttagaagaagctctacaggaa
caggaatctgaactggagggagttcgaactcagatacaggatgcacaggcacaagtagag
gaagccagcaagatgcgaaggcggcttaatggtgaagtattaaaagcatctggtacaact
acagtaccagttgattcaaatgcaaaagcaggacaaacacccaagaggacagctgcagct
attgctgcggaggttgcagagaagcttgcagcttcctcctcttctcaaatgatcatgcac
gctgttctctctacatttgccgctgaagaagcaaagaatgctccaaaacctgaaacctcc
ttacctgtttcagatccaaatgtttttatgctagctcagccacttactgctccaacaaca
cattcgtaccagtcagttttgttcacccaacctacaatgcagaaccagactccgaccact
caatctcaatttcacattcttcccaacccatcctctcagccttatatacagccaggggga
gggattgcaaccccgtatgcttatggtaacttttctgtgttgcctccaggaccaccccca
cccccaccctataaggtaagtcaaaccgtgcccttggctcaacaaccatcgcaaatgcct
cagcagcaaccgttaccagtggcacaacaggaggccccaataaaccagaaacaacccagg
tctttaactcaacaaaccctgggtgctaatttcagacctcaaccacctggattggagtac
tatggccacccatctcattcttag
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