Populus trichocarpa (black cottonwood): 7477758
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Entry
7477758 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7477758 isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7477758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7477758
03012 Translation factors [BR:
pop03012
]
7477758
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
7477758
Translation factors [BR:
pop03012
]
Eukaryotic type
Release factors
7477758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
G-alpha
TrcR
Motif
Other DBs
NCBI-GeneID:
7477758
NCBI-ProteinID:
XP_002319868
UniProt:
B9I879
LinkDB
All DBs
Position
13:9649446..9661874
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AA seq
522 aa
AA seq
DB search
MAEVTPLDIAEEIRSLQLDSAASEVNGVINPEDAKPEEVEEVDKMEEDSNDNVTISTQEM
QAETSKVKDKEVPVSEDVGAPVEMEEDNKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVD
DRTIQKYEKEAKEKSRESWYMAYIMDTNEEERVKGKTVEVGRAYFETETSRFTILDAPGH
KSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKM
DDPTVNWSKERYDEIESKMVPFLKLSGYNVKKDVQFLPISGLLGTNMKTRMGKAICPWWN
GPCLFEALDAIEVPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVTEGDSLLVMPNKTV
VKVLAVYCDENKVRCAGPGENVRVRLSGIDDEDILSGFVLSSVARPITAVTEFDAQLQIL
ELVDNAIFTAGYKAVLHIHAVVEECEIVQLLQQIDPKTRKPMKKKVLFVKNGAIVVCRVQ
VNNLICIEKFSDFAQLGRFTLRTEGKTVAVGKVMELPLGYNS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagtgactccacttgatattgcggaggagattcgttcgttacagcttgactca
gcagcatcagaggtaaatggggtgattaatccagaagatgcaaagccagaagaagttgag
gaggtggataaaatggaggaagattcaaatgataatgtcaccataagcactcaggaaatg
caggctgagacatccaaagtgaaagataaggaagtacctgtatcagaagatgtgggagct
ccggttgagatggaagaagacaataagaagcgacacttaaatgttgtttttatcggtcat
gttgatgctggtaagtccaccactgggggccagatactctttcttagtggacaggtggat
gatcgcacaatccagaaatatgagaaagaagctaaggaaaaaagtagagaaagttggtat
atggcttatattatggacaccaatgaggaggagagggttaagggcaaaacagttgaagtt
ggaagagcgtactttgaaacagagacatcaagatttacaattttagatgcaccgggccac
aagagttatgttccaaatatgattagtggagcatctcaggctgatattggtgtgctagtt
atttctgctcggaaaggagaatttgaaactggctatgagagaggagggcagacccgtgag
catgttcaacttgcaaagaccttgggagtgtctaagctgcttgttgttgtgaataaaatg
gatgatccaactgtgaactggtcaaaagaaaggtatgatgagatcgaatcaaagatggta
ccttttctcaagctttctggctacaatgtgaagaaagatgtccaattcctaccaatatct
ggtctgcttggcaccaacatgaaaacaagaatgggtaaggctatatgtccatggtggaat
ggcccatgcctttttgaggcccttgatgctattgaagttcctccacgagatccaaagggt
ccttttaggatgcctattattgacaaatttaaggacatgggaactgttgttatgggcaaa
gtagagtctggtagtgtgacagagggtgattccttgttggtcatgccaaacaagactgtg
gtgaaagttcttgctgtatattgcgatgaaaacaaggtaagatgtgcaggaccaggagaa
aatgtacgggttagattatctggaattgatgatgaggatatattgtctggttttgtgctt
tcaagtgttgcaaggccaatcactgcagttacagagtttgatgcacagttgcaaatcctt
gaactagtggataatgcaatttttacagctggctacaaggctgtcttgcacatacatgct
gttgttgaggagtgtgagattgttcagctgctgcagcaaattgatccaaagacaaggaaa
cctatgaaaaagaaagtcctctttgtgaagaatggtgccatagttgtctgccgtgttcag
gtaaacaacttgatatgcattgagaagttttcagattttgcacaactcggcaggtttact
cttcgtactgaggggaaaacagttgcagtgggaaaagtcatggaacttcctttgggttat
aattcttaa
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