Populus trichocarpa (black cottonwood): 7478355
Help
Entry
7478355 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 12b isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7478355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7478355
03036 Chromosome and associated proteins [BR:
pop03036
]
7478355
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7478355
Coactivators
SAGA/TFTC/STAGA complex
7478355
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
7478355
STAGA complex
7478355
TFTC complex
7478355
SAGA complex
7478355
SLIK complex
7478355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Histone
Motif
Other DBs
NCBI-GeneID:
7478355
NCBI-ProteinID:
XP_024453364
LinkDB
All DBs
Position
3:9159595..9167088
Genome browser
AA seq
625 aa
AA seq
DB search
MAENAAAAAAASSPKPLPSPNTIIDPSSQPQPQPQQAATLTNTNTTNLTQTQNLSNLPQN
THISSSPSLDHSQISSSPSLQPPQQQQQPVLQQQPQQQNVTAMSGYQIQQTLQRSPSMSR
SSQINQQQQNQYGGVLRQQQQQGLYGQMNFGGSASIQQNSQQNQQLGGANLSRSALLGQT
GHLPMFTGAAAAAAAAQLNLPSQLLASPRQKAGLAQGSQFHSGDSPGQSLQGIQAMGVMG
SSLNLSQLRPNGALAYAQQRMSAGSMRQQLVQQNSLTSQVQSLQRTQSLAYMNHQMSGLA
QNAQPTMMQSSLSQQQWLKQMPTMSGPASPSLHLQQRQSQAFLQQQLASSGQLHQNSMAL
NSQQLSQLVQQQPQIGHQQLQQQQQQQQLLQQQQQQQQQQLLQQQQQQQLQQVSLHQQQQ
HQQQSPRMPGPPGQKTLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQ
VDSHGKLDPEVEELFLEIADDFIDSVTAFACSLAKHRKSSTLESKDILLHLEKNWHLTIP
GFSSEERKHQSKPLPSDLHKKRLDMIRALMESSQSEENNINPKEMIRQGHGNPAVTNHLI
RPSPSSEQLVSQSTGSPMVQQITRF
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgcagctgctgctgctgcagcctcttcgcctaaacctctcccttctccg
aatacaattatagacccatcgtcacaaccacaaccacaaccacaacaagcagcaaccttg
acgaacactaacacgacgaacttaacacagacacaaaacctatccaatttacctcaaaac
acacatatctcttcctctccttcactggaccactcccaaatctcctcttcgccttctctc
caacctccacaacagcaacagcaaccggttttgcagcaacaaccgcagcagcagaatgtc
accgcaatgtcaggctatcaaatccaacaaacccttcaaagatctccttccatgtcacgc
tcgagccaaattaaccaacaacaacagaaccaatacggtggcgttttgaggcagcagcag
caacagggcttatacgggcaaatgaattttggtgggtctgcttcaattcaacagaattcg
cagcagaatcaacaattgggtggtgccaatttgtctcgctcagcacttctcggccagact
ggccaccttcctatgttcaccggcgctgctgctgctgctgccgccgctcagttgaacttg
ccctcacaattgttggcttcaccgaggcagaaagctgggttagcccaagggtcccaattc
cattctggtgattctccggggcagtccttgcaggggatacaagcaatgggagtgatggga
tcatcgctaaatttgtcacaactaagacctaatggggcacttgcatatgctcaacagcga
atgagtgcagggtcaatgaggcagcaactggtgcaacaaaattcgctcacctctcaggtt
caaagcctacaaagaacacaatcactggcatatatgaaccatcagatgtcagggctggct
cagaatgcacagccaactatgatgcagagctctctgtcacagcaacagtggttgaagcaa
atgccaactatgtctggtcctgcctcaccttcactccatcttcaacagaggcagtcacag
gctttcttgcagcagcaattggcttcatctggtcaactgcaccagaattcaatggcactg
aactcacaacagttatcccagctggtacagcagcagccccaaatcggacaccaacaacta
cagcagcagcagcagcagcagcaactactacagcaacagcaacagcaacagcagcagcaa
ctactacagcaacagcaacagcaacagttgcaacaagtgtctttgcatcagcagcagcaa
catcaacaacaatctccaaggatgccaggacccccaggccagaaaactcttagtttgaca
ggatcacagccagatgcaacagcatctggaacaactacaccaggggggagttcaagccaa
ggaacagaagcaactaatcaacttctcgggaagagaaagatacaggacttggtttcacag
gtggattcacatggaaaactagatcctgaagttgaagaactttttctggaaattgccgat
gactttattgattcagtgaccgcatttgcatgcagtttggctaagcatcggaaatcttca
actttagagtccaaagatatattgctgcacttagagaaaaactggcatttgacaattcct
ggattttcatcggaagagaggaagcaccaaagtaaacctttgcctagtgatctccacaag
aagcgtcttgatatgattcgtgcattgatggagtcctctcagtctgaagaaaataatatc
aatcctaaagagatgataagacaaggacatggcaacccagctgttactaatcacctgata
agaccttcaccaagttcagagcagttggtttcgcagtcaactggttctccaatggtgcag
cagattacacggttttaa
DBGET
integrated database retrieval system
