Populus trichocarpa (black cottonwood): 7478673
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Entry
7478673 CDS
T01077
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7478673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7478673
Spliceosome [BR:
pop03041
]
Complex A
U1 snRNP components
U1 related factors
7478673
Complex B
7478673
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
SMODS
DUF5001
Motif
Other DBs
NCBI-GeneID:
7478673
NCBI-ProteinID:
XP_024437397
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All DBs
Position
1:30220928..30234574
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AA seq
1022 aa
AA seq
DB search
MANNPQFSGMQPLQPPLVGPMDHPQNFAPPPPMPIQFRPVGPVQPSQQFIPVSSPHFQPV
GRGVTVMNPGLPPQPPQPQFPHPMQQLPARPNQPSLGPPPPQAIPLPNAQPNRHVMSGSP
LPPPSVQTPNSYMPGLGGPGVPLSSSYTFAPSSYGQPPVTFNAVTQFQPMPQMHVQPIPT
GGHPASSMNHNTAPVTPIQRNGEQSSVTTTNVRATSIQPKPTEEALTEWKEHTSANGRRF
YYNKRTRQSSWEKPYELLTPIERADASTDWKEFKSPDGRKYYYNKVTKQSKWEIPEELKL
ARARVENTSTMEKQSEVFTNSHASTSVPQSADKTPSIVDASTAQGAPSSPVLVIPVAAAG
NSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVADVPKSAEVTATAVNTITAPMNNFSD
QDKPSSADEAPAQDKEEAEKEVVIDEKVNNVPLEEKAVNHEPLLYADKLEAKNLFKALLE
SANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKARE
EFKNMLEESKELTASIRLSKAVTLFENDERFKAVERERDRKDLIETYLQELEEKERAKAQ
EQRKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRIEIFQDYLHDLEK
EEEEQRKIHKEELRKAERKNRDEFRKLLEEHVAAGTLTAKTNWRDYHLKVKDLPAYVAVA
SNNSGSTPKDLFEDVAEELQKQYHEDKTRIKDVVKLKKVPLASTWTLEDLKVAIIEDVGS
PHISDVNLKMVFDELLERAREKEEKEARKRKRLEDDFLILLQSIKDITASSKWESCKEIF
DGSREYSSIGEEGFCREIFEEYVSQLKDQEKENEWKRKEEKAKKEKEREERERRKAKHRR
EKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDR
SKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRE
TR
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaccctcaattctctggaatgcagcctctccagcctcctctggttggcccc
atggatcatcctcaaaattttgctccgccaccaccaatgcccattcaattccgaccggtt
ggtccagtgcagccatcacagcaattcattcctgtgagttctccacactttcagcctgta
ggccgaggtgtcacagtgatgaatccaggattgcctccccaacccccacaacctcaattt
cctcacccaatgcagcagttaccagctagacctaaccagccaagccttggtccaccacca
cctcaggcaattccattaccaaatgctcagccaaacaggcatgtcatgtctggatctcca
ctgcctccacctagtgttcaaactccaaacagctacatgcctggtttaggtggcccagga
gtgcctctatcgtcatcgtatacttttgcaccgtcttcatatggtcaaccacctgtaacc
tttaatgctgtaactcaatttcagcccatgcctcaaatgcatgtacagcctattcccact
ggaggacaccctgcatcatccatgaaccataacactgcaccagttacacctatacagcgc
aatggcgaacaatcttcagttaccactactaatgttcgggcaacaagtatccagcctaag
ccgactgaagaagccttgacagagtggaaagaacatacatctgctaatggaaggagattt
tattacaataagaggacaaggcaatctagttgggagaagccttatgagttgctgacgcca
attgagagggcagatgcatcaactgactggaaggagtttaagagtcctgatggacgaaaa
tattactacaataaagttaccaagcagtcaaaatgggaaatcccagaagaattgaagttg
gcccgtgcacgagtagaaaatacatctaccatggaaaaacaatcagaagtctttactaat
tctcatgcctctacttctgttcctcaatccgcggataagacaccatcaattgtagatgct
tctacagctcaaggggcaccatcgagtccggttcttgttatacctgttgctgctgctggt
aattcacagtcgcagttagcttctgaatcatcgaccttacctgtcatgtcatcttccatg
acgaccaatgcagatgaagttcagacaattgagattcctgttgctgatgttccaaaaagt
gctgaagtcactgccacagcggtgaacaccataactgcaccaatgaacaacttttcagat
caagataaacctagttcagcagatgaagctcccgcacaagacaaagaggaagctgaaaag
gaggtggtcatagatgaaaaggttaacaatgttccattggaagagaaagcagttaatcat
gagcccttactttatgctgataagctggaagcaaaaaatttatttaaagcacttctggaa
tctgcaaatgttgggtctgaatggacatgggaccaggccatgagagtaataattaatgat
aaaagatatggtgcattaaaaacacttggagagagaaagcaagcatttaatgagttcttg
ggtcaaaagagaaaacaggaagctgaggaaaggaggattaaacagaaaaaagcacgggaa
gaattcaagaacatgctagaagagtccaaagagctgacagcatcaattagattgagcaaa
gcagtgactttgtttgaaaacgatgagcgttttaaagctgttgaacgggaaagagaccgt
aaggatctgattgaaacctacttgcaggaacttgaagaaaaggaacgagcaaaggcacag
gagcagcgcaagaggaacattatggaatataggcagtttctggaatcatgcgaattcatt
aaggcaagcacccagtggcgaaaagtacaagatcggttagaagctgatgaaagatgttca
cgtcttgaaaaaattgatcgcatagaaatttttcaggattatttacatgatttggagaag
gaagaagaggagcaaaggaagatacataaggaagagctgagaaaggcagagcgtaaaaat
cgtgatgagttccgcaagctacttgaagaacatgttgctgcaggcactcttactgccaaa
actaactggcgtgattatcacctgaaggttaaagatttacctgcatatgtggctgttgct
tcaaacaactcaggttcaactccaaaagatttgtttgaagatgtcgctgaggagctacag
aaacagtatcatgaggacaaaactcggataaaggatgttgtaaagttgaaaaaggttccg
ttggcatcaacctggacacttgaagatttgaaggttgctattatcgaggatgttggctct
ccacatatatcagatgtgaacctaaagatggtatttgatgaattgctggaaagagccagg
gaaaaggaggagaaagaagccaggaagcgtaaacgtcttgaggatgattttctcattcta
ctacagtctattaaggatattactgcatcttctaagtgggagagctgcaaggaaatcttt
gatggtagccgagaatacagttccattggtgaagaaggcttctgtagagagatatttgag
gaatatgtatctcaactgaaagatcaggagaaagagaatgagtggaaacgaaaggaggaa
aaggcaaaaaaggaaaaagagagggaggaaagagaaaggaggaaagcaaaacacagaagg
gaaaaggagaggggacatgatagagaaacaagaaaggaagaagaagatgttgaaattgat
gatacaatagaaactcaagtttgtagtgataagaaaagatctgggagtgacaatagcagg
aaacagaggaagaggcatcaaaatgctgtggatgatctggatgaaagcgagaaggatagg
tccaagagttcacacagacatagcagcagcgacctcaaaaaatcaagaaggcatgcttcc
actcctgagtcagatagtgaaagcaggcacaagagacacaagagagaccaccgaaatagt
tctcgtagaactggtgatcttgaggatcttgaagatggggaatttggtgaggatagggaa
actcggtag
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