KEGG   Populus trichocarpa (black cottonwood): 7478774
Entry
7478774           CDS       T01077                                 
Name
(RefSeq) rDNA transcriptional regulator pol5 isoform X1
  KO
K02331  DNA polymerase phi [EC:2.7.7.7]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7478774
   03400 DNA repair and recombination proteins [BR:pop03400]
    7478774
Enzymes [BR:pop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     7478774
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    7478774
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    7478774
SSDB
Motif
Pfam: DNA_pol_phi
Other DBs
NCBI-GeneID: 7478774
NCBI-ProteinID: XP_002313953
LinkDB
Position
9:7653128..7660228
AA seq 1305 aa
MGSKKRSPNSVAEVEDLDNTDTNIENANLEDTNNENASSISSRKKMKKDKNKETEAPDED
ASKAGLSNIPSSMKPMERRKKRKALDKKRLHAASESKEVKTKKMDVDSKVTESKEHMGAS
SSGTLPKFHIGVFKDLASVDVSVREGAVERLVTELQEVQKAYEVTENKEVVEGGLKLEAE
KDDGLNDCAPSVRYAVRRLVRGASSSRECARQGFALGLTVLVDTVPSVKVDSVLKLIVDL
LEVSSSMKGQDIRDCLLGRLFAYGALALSRRLTEEWISDHNTLIIKEFTDVLISLAAKKR
YLQEPAVAIILELVEKLPTEAVLNHILEAPRLREWFEGGIDAGNPDAGNPDALLLALRIR
EKISIDSEMFGNFLPHPFSPSRLFVPGHLSSIINCLKESTFCQPRVHGVWPVLVNILLPD
TVMQAEDVVSASNSLKKHKKSRKSSSSEEEIARSVRCFCEVIIEGSLLLSSHDRKHLAFD
ILLLLLPRLPASFIPYVLSHKIVQCMVDVLSTKDSWLYKVAQHFLKELSDWVGNDDVRRV
AVIVALQRHSNARFDGITKTKTVKALVTEFKTESGCMLFIQNLMNMFVDEGNASEEPSDQ
SQTTDDNSEMGSVEDKDSNGATANSDFLKTWVVESLPIILKHLKLEPEARFGVQKEILKF
LAVQGLFSASLGSEVTSFELQEKFKWPKAPTSSAICRMCIEQIQSLLANAQKIEGLRSLS
SGLEHSDLGSYFMRFLSTLRNIPSVSLFRSLSDDDEKAFEKLQEMETRLSREEKNCVIGA
EANKLHAMRFLLIQLLLQVLLRPGEFSEAASELVICCKKAFAASDLLDSGEEELDNDADP
KLMDVLVDTFLSLLPQSSAPLRSAIEQVFKYFCNDVTNDGLLRMLRVIKKDLKPPRHREE
GRDDGDDDDEDFLGIEEVEEGEGEGEEEMDEAETGETGEDEEQTDDSEAVTEVEEAGKEL
SDDSDGGMDDDAMFRMDAYLAQIFKDRKNQAGGETAQSQLVLFKLRVLSLLEVYLHENPA
EPEVLMVYLNLARAFVNPQTAEISEQLGQRIWGILQKKILKAKDFPRGDAVQLPTLESLL
EKNLKLASKPLKKKKSAGNLSKKKQLAMWKRHKMIVSLAQDSTFWILKIIGARNFPECEL
QGVIDIFKGELARYFESKTSQIKSDFLTEIFRRRPWIGHHLFGFLLEKCSRAKLEFRRVE
ALDLVIEILKSMVSSGNDESNRNASKKVLKNHLQKLSHLIKELATNMPEKPSRRAEARKF
CGKVFRYVSTYDLTKSFLKYLAPEAEAACESQLGELYLNFKKIER
NT seq 3918 nt   +upstreamnt  +downstreamnt
atgggaagcaagaaaagaagccccaattcagtagcggaagttgaggatttagataataca
gacacaaatatcgagaatgcaaacttagaggatacgaataatgagaatgcaagttcaatt
tcaagtagaaagaaaatgaagaaagataagaataaagagaccgaagccccggatgaggat
gcttccaaagcaggcctttctaacattcctagctcaatgaaacccatggaaagacggaag
aaaaggaaagcattggataaaaagcggctacatgctgcttcagagagtaaggaagtgaag
actaaaaaaatggatgttgattcaaaggttaccgaaagtaaagagcacatgggagcttcc
tcgagtgggacgttgccgaagtttcatattggtgtctttaaggacctggcatcggtggat
gtatctgtgagagaaggtgcagtggagagattggtcacggagctgcaagaggttcagaag
gcatatgaagttacggagaataaggaggtggttgaaggtggattgaaactggaagcggag
aaggatgatgggttgaatgattgtgcaccttctgtgagatacgctgtgcgtaggcttgtt
cgtggtgcttcttcatcaagagagtgtgcaaggcaaggatttgcactgggcttgacagtg
ttagttgatacagttcctagtgtcaaagtggattcagtgctgaaactaatagttgatttg
ttagaagtttcttcatcaatgaagggtcaggatataagagattgccttttaggtcggtta
tttgcttatggtgctcttgccctatcaagaagactgactgaagagtggatttctgatcat
aacaccctcatcattaaagaattcaccgatgtgcttatctcccttgcagcaaaaaaacga
tatctgcaagagcctgctgttgcaattatattagaattggttgaaaagttgccaaccgag
gccgtgctgaatcacattcttgaagctccaagactgcgtgagtggtttgaaggtggtatt
gatgccggaaatcctgatgccggaaatcctgatgcattgcttttagctttgagaattcgg
gagaaaatttccattgatagtgaaatgtttggaaattttttgccacatccgttcagccct
agtagactttttgtgcctggtcatttgtcctctattattaactgcttgaaggaatcaact
ttctgtcagcctagagttcatggtgtatggcctgttctggtaaatatcctcttacctgat
actgttatgcaagctgaagatgtggtgtcagcttctaattctctaaaaaagcacaaaaaa
agtcgcaagtctagttcatctgaagaagaaattgccaggagtgttcggtgtttctgtgaa
gttattatcgaaggctcccttcttctttcttcgcatgatcgcaagcacctggcatttgat
attctgcttctccttctcccaaggctccccgcatctttcattccatatgttctctctcac
aaaattgtgcaatgcatggtggatgtactttcgacaaaggactcttggctgtataaagtt
gctcagcattttctcaaggagctgtcagattgggttggaaatgatgatgtcagaagagtt
gctgttatagtggctttacagagacacagcaatgcaagatttgatggcatcacaaaaaca
aaaacagttaaagctttggtgacagagtttaaaactgaatctggttgcatgttgtttatt
cagaatttaatgaacatgtttgtggatgaaggaaatgcttcagaagaaccgtcagaccag
agtcagactactgatgacaattcagagatgggttcagtcgaggataaggattcaaatggt
gcaacggcaaattctgatttcttgaagacttgggtggtggaatcccttccaattattttg
aaacatttgaagctggagccagaagcaaggtttggggtgcagaaggaaattttgaagttt
ctagctgttcaaggtctgttctctgcatctcttggctctgaagtgacatcttttgaatta
caggagaaatttaagtggccaaaggcgcctacctcgagtgctatttgcagaatgtgcatt
gagcagatccaatcactgcttgcaaatgctcaaaagatagaggggttgcgttctttgtct
agtggcctggagcacagtgatcttgggtcttacttcatgcgttttctcagtacactacga
aacattccttcggtttctctttttcgatctttgagtgatgacgatgaaaaggcttttgaa
aaattgcaagaaatggaaactaggctttccagagaggaaaaaaattgtgtgattggtgct
gaagcaaataaattgcatgcaatgaggttcttgctgatccagttgctgcttcaagtactc
cttcgacctggagaattctcagaagctgcatctgaacttgttatatgttgtaagaaagct
tttgcagcttctgatcttcttgactcaggagaagaggagttggataatgatgcagatcct
aagttaatggatgtccttgtggatacattcctttcattgttacctcagtcatcagctccc
ttgcgctctgctattgagcaggtttttaagtacttctgtaatgatgtgaccaacgatgga
cttcttcggatgttgcgtgtcattaagaaagatttgaagccacctagacatcgggaagaa
ggtagagatgatggagatgatgacgatgaagattttcttggtattgaagaagtagaagaa
ggagaaggagaaggagaagaagaaatggatgaagctgagacaggtgaaacaggtgaggat
gaagaacagactgatgactctgaggcagtgactgaggttgaagaagctggcaaagagctg
tctgatgattctgatggaggaatggatgatgatgcaatgttccggatggacgcttatctt
gcccagatttttaaagacagaaagaatcaggctggaggtgaaaccgcccaatcccagctt
gttctgttcaaacttcgtgtcctttcattgctggaggtttacctacatgaaaatccagct
gagcctgaggttctgatggtgtacttgaacttggctcgggcattcgttaaccctcagact
gcagaaatcagcgagcagcttggacagcgaatatggggaattttgcagaagaagatattg
aaagcaaaggacttcccaaggggtgatgctgtgcaactacctactcttgaatctttgttg
gaaaagaacttaaagttggcatcaaagccattaaagaaaaagaaatctgctggtaattta
tccaagaaaaaacagttggccatgtggaagcgacacaaaatgattgtttcccttgctcag
gattcaaccttttggattctgaaaattattggtgccagaaattttccggagtgtgaacta
cagggggttattgatattttcaagggtgaactggcgcgatattttgagagtaagacatct
caaataaaatctgattttttgacagaaatatttcgaagaaggccatggatcgggcaccat
ctctttggtttccttttggagaaatgtagcagggcaaagttggagtttcgtcgagttgaa
gcacttgatctagtaatagaaatattgaagtcaatggtttcttctggtaatgatgaaagt
aatcgcaatgcatcaaagaaagtcttgaaaaatcatttgcaaaaactcagtcatctgata
aaggaattggcaacaaatatgccagaaaagccatcaaggcgggctgaagcacgcaagttt
tgtggtaaggtcttccggtatgtgtcaacatatgacctgaccaaatcatttcttaaatat
ctagccccagaagctgaagctgcttgtgaatctcaacttggagagctgtatctcaatttc
aagaagatcgagagataa

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