Populus trichocarpa (black cottonwood): 7482634
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Entry
7482634 CDS
T01077
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7482634
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
7482634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDS5
PTM_DIR17_Tudor
POP1_N
Motif
Other DBs
NCBI-GeneID:
7482634
NCBI-ProteinID:
XP_024443866
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Position
16:complement(260390..273016)
Genome browser
AA seq
1696 aa
AA seq
DB search
MGEEKKLEEKLKEVGSKLETLPSTKDGVVKLLKQAATCLSEMDQSPPASVSESMQPFLDA
IVKPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFHLIVGTFSGLSDTGGP
SFGRRVVILETLAKYRSCVVMLDLECNDLVNKMFSTFFTVASDDHQESVLSSMQTIMVVL
IEESEDFREDLLLVILSVLGRNRSDISMSARKLAMKVIELCAGKLEAGIKQFLISLMSGD
SRLANSKIDYHEVIYDVYRCAPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFSLPGS
AITEAFQPIFSEFLKRLSDRVVTIRMCVLECVKGCLLSNPFRAEAAQIISALCDRLLDYD
ENVRKQVVDVICDVACHALNSVPVETIRLVAERLRDKSQLVKRYTMERMAEIFRVYCVKS
SDGSINPGEYDWIPGRILRCLYDKDFRSDTIESVLCGSLFQTEFAVKDRCKYWVRIFSVI
DKVEVKALEKILEQKQRLQQEMQRYLLLRQSHQDRDTPEIQKKVLFCFRIMSRSFAEPAK
AEENFHIVDQLKDANIWKILTNLLDPSTTFHQACTGRDDLLKILGEKHRLYDFLSSLSMK
CSYLLFNKEHVKEILSDVNTHNSAGNMHFTRSCMDLLVILARFSPLLLGGSGEELINFLK
DDNEIIKEGALHVLAKAGGTIREQLAESSSAIDLILERLCLEGSRRQAKYAVHALATITK
DDGLKSLSVLYKRLVDMLEEKRHLPAVLQSLGCIAQAAMPVFETRENEIEKFIKNKILEC
SSKSEDNTKACWDDKSELCLLKIYGIKTLVNSYLPVKDVQLRRGIDSHLEILRNILLFGE
ISKDIESSSVDKAHLRLASAKAVLRLSKHWDHKISVDLLHLTLRTPEIAFPQARKLFLSK
VHQYIKDRVLDPKYACAFLFNMTGSKPLDFEEENQNLADIIQMLQQAKTRHVPVQSDANP
LSVYPEYILPYLVHALAHQSCPNVDECKDIKAFEPIYRQLYLILSMLVHKDEGVKLEAGI
NKEKEKEKENEKEKDNDKDKDKDKETNSLIVSIFQSIKCSEDVVDREKSKNSHAISELGL
SIIKRLAPKEDDLQTLPSPVSLPPLLYKIYEYKECEDAVANEGKTWLAEESVLTHFDSLK
FETNGTSFLSHQASSDIAGDEVLNDSEREANEVTLGKMIKQLKSQGNKGGKTKKNKSSAA
KVKDAENDVDILKMVREINLDNMGLSNMFESSNGHKDLSGKIKSESEHQKVKKGNVSDMT
PVPVPKRRRSSSAHNASRFPRSLLKDPSRASEDDSSPDLKGKKSKSKSAGSELLVSGIQK
KKNVSSKLKGKSSELGDNGKENEVGESDKDNLMPGVLMETDKVNTTNSPQSLTGSMKKRR
RSVAGLAKCTTKKSGINIEEIMGYRIKVWWPMDKKFYEGTIKSYDPLKRKHVILYDDGDI
EVLRLEKERWELVDNGPKRTKKSNSFKRTPSKDVSPAQKNRTSSSLSQNKKSVTIVKKKR
TPSKNLKRVHKEPKNKVDSDVSSPEHTMASGGDKLKSDDSEGDHAERLSQGMMDVDESDK
EVVSISKGKHLEDTEERSNHSEESDGEVKSNYEAEVSEDMESIPEDDKKGDPREESHSEE
KDVDESSEALGVEVNEDKSDSEGNRDVDVRKPSRKSKKLRKKSSNPVNEEDAEISDDETL
SNWKHKVGKSASRRAR
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggagaagaagctcgaagagaagttaaaggaggtgggatccaagctggaaaca
cttccttctactaaagatggtgttgttaaacttctgaagcaagctgctacttgtctttct
gagatggatcagtcaccaccggcttcagtgtcagagtcaatgcagccttttcttgatgca
attgtaaagccagaattgttgaagcatcaagatagggatgttaagcttctagttgcaacc
tgtatttgtgagataacccggatcactgcacccgaagctccttacagtgatgatgtttta
aaggatatattccacttgatcgtaggcacatttagtgggttaagtgatactggtggtcca
tcatttggaaggagagttgttattttggagactcttgccaaatataggtcttgtgttgtg
atgctggatcttgaatgtaatgatctggtgaataagatgttcagtacattttttactgtt
gccagtgatgatcatcaagaaagtgtattatcatcaatgcaaacaataatggttgttctc
atagaagaaagcgaggatttcagagaggatcttctacttgttatcttatctgtattaggt
cgtaacagaagtgatatctccatgtcagcaaggaaacttgccatgaaagttatagagctt
tgtgcaggaaaacttgaagctggcataaagcagttcctcatatcattaatgtcaggagat
agcaggttggcaaatagtaaaatcgactaccatgaagttatatatgatgtttaccgttgt
gctcctcagatcctatcaggagtcgttccatacctcacaggagagctgctgaccgatcag
ctagacactcgtttaaaagcagtggggttggttggggatctattttctttacctggctct
gccatcacagaagcatttcagccaatcttttcagagtttttgaaaagattgagtgataga
gtagttaccatccggatgtgtgtccttgaatgtgtcaaaggctgtcttttgtcaaatcct
tttcgagcagaggcagctcaaatcatctctgccctttgtgaccgactgttggactatgat
gagaatgttcgaaagcaggttgttgatgtaatctgtgatgtagcatgccatgccttgaat
tctgtccctgtcgaaaccataaggctagttgcagaacgtcttcgagacaaatctcaactt
gttaaaagatatactatggagagaatggctgagatattcagggtttattgtgtaaagtct
tctgatggctcaatcaatcctggtgaatatgattggattcctggaaggattttgagatgt
ttgtatgacaaagatttcagatcagatacaattgaatctgttctttgtggctctctgttt
cagactgaatttgcagtaaaagatagatgtaaatattgggtaagaatcttctctgtcata
gacaaagttgaggtgaaagctcttgaaaaaatactggagcagaagcaaaggttacagcag
gagatgcagaggtatctattactgaggcagtcgcatcaggacagagatactcctgagatc
caaaaaaaggttctgttctgttttcggatcatgtctcgctcctttgcagagcctgccaag
gctgaggaaaattttcatatagttgatcaattgaaagatgccaatatttggaagatttta
acaaatctactcgatccaagcactaccttccatcaagcttgcactggtcgggatgattta
cttaaaatactcggcgagaaacaccgactctatgattttttgagcagtctttcgatgaag
tgttcttatttacttttcaacaaggagcatgtgaaagaaattctttcggacgtcaacaca
cataactctgctggaaatatgcattttactcgatcttgtatggatttactggtgattctt
gctcgcttcagtccattgctgcttggtggctcaggggaagagctaataaattttctgaaa
gatgacaacgaaataataaaagaaggtgctttgcatgttttggcaaaggctggtggtaca
atccgagaacaacttgcggagtcatcaagtgcaattgaccttatattggagaggctttgc
ttagaaggtagtcgaagacaggccaagtatgctgtgcatgccctagcaacaatcacaaag
gatgatgggctcaagtccctctctgttttatacaagagactcgttgacatgctggaggag
aagagacatttgcctgctgtactacaatctctgggatgcatagcacaggctgcaatgccg
gtttttgaaactagagaaaatgaaattgaaaaattcattaagaacaaaattctagaatgc
agtagtaaatcagaagataatacaaaagcttgctgggacgacaaaagtgaactttgtttg
ttgaagatatatggaattaagacattggtcaacagctacttgccggttaaagatgttcaa
cttcgtcgtggtattgacagccatctggaaatccttagaaacatacttctttttggagaa
atatcgaaagatattgaatcaagttcagttgataaggcccacttgaggcttgcttctgca
aaggcagttcttcgtttgtcgaagcattgggatcataagatatctgttgatctcttgcat
ttaaccttgaggacaccagagattgctttcccacaagctaggaaattattcctgagtaaa
gttcaccaatacatcaaggaccgggttctggatccaaagtatgcttgtgccttcttattt
aatatgacaggatccaaaccccttgattttgaggaggagaatcagaaccttgctgatatt
attcagatgctccaacaagctaaaactcgacacgtccctgtgcaaagtgatgcaaatccc
ttgtcagtttatcctgaatatattctcccatatttggtccatgctcttgctcatcaatca
tgtcctaatgtagatgagtgcaaggatattaaagcatttgaaccaatataccggcaactg
tacttgatcctttccatgctggtgcataaagatgaaggtgtcaagttggaagctggtatc
aacaaggagaaggagaaggagaaagaaaatgagaaggagaaggacaatgacaaagacaaa
gacaaagacaaagagaccaactctctcatagtttccatctttcagagtataaagtgctca
gaagatgtagttgatcgagagaagtcaaagaattcacatgctatctctgaacttgggctg
tcaatcatcaagcgcttagctcccaaggaggatgatttacaaaccttgccttcaccagtt
tctttgcctccactgctgtacaaaatatatgaatataaagaatgcgaagatgctgtggca
aatgaagggaaaacatggttggctgaagaaagtgtcttgacccactttgactcgcttaag
tttgaaactaatggaacttcctttttgtcacatcaggctagttcagatattgctggggat
gaggttctaaatgacagtgaaagagaagctaatgaagtgactcttgggaaaatgataaag
caattaaaatctcagggaaataaaggtggaaaaacaaaaaagaacaagtcttcagcagct
aaagtgaaagatgctgaaaacgatgttgatatcttgaagatggtccgggagatcaatttg
gataatatggggctatctaatatgtttgagtcaagcaatgggcacaaagatctaagtggg
aagataaagtcagaatcagagcatcaaaaagtgaaaaaaggaaatgttagtgatatgaca
cctgtgccggtacctaaacgtcgaagatcatcatctgctcataatgcttctagatttccc
cgaagtcttttaaaggatccttcgagagcttcagaggatgattcaagccctgatttgaaa
ggaaaaaagtccaagtccaagagcgctggatctgaattgttggtatcaggcattcaaaag
aagaaaaatgtctcatccaaacttaaaggcaaaagctctgagttgggtgacaatggcaag
gaaaatgaagttggagaatctgacaaagataacctgatgcctggtgtgctaatggagact
gataaggtcaatacaactaatagcccccagtctttgactggttctatgaagaagcggaga
agaagtgtagcagggttggccaagtgcacaacgaagaaaagtggcattaatattgaggag
attatgggttacagaataaaagtttggtggcccatggataagaagttttatgaaggcacc
atcaaatcttatgatcctttgaaaaggaaacatgtgatattatatgatgatggagatata
gaagtactccgtttagaaaaagagcggtgggagctcgttgacaatgggcccaagcgcaca
aagaagtcaaattcatttaagcgcaccccttcaaaggacgtttcacctgctcagaaaaat
agaacatccagtagtttaagtcagaataagaagtcagtgacaattgttaaaaagaaaaga
acgccatcaaaaaacttaaagcgtgtgcataaagagccaaagaacaaagttgattctgat
gtatcaagccctgaacataccatggcatctggaggagataagctgaaatcagatgattct
gaaggggatcatgctgaaaggttgtcccagggcatgatggatgtcgatgaatctgacaag
gaagtggtgtcaatttccaaaggtaaacacttggaagacacagaggaaagatcaaatcat
tctgaggaatctgatggagaagtgaaatccaattatgaagcagaagtttctgaagatatg
gaaagcataccagaagatgataaaaaaggtgatcccagagaggaatcccattcagaagag
aaagacgtagatgaatcaagtgaagccttgggagtggaagtcaatgaagacaaatcagat
tctgaagggaatcgagatgtagatgtcaggaaacctagtagaaaatcaaagaagctccgt
aagaaatcatcaaatcctgtcaatgaagaggatgctgaaatctctgacgatgaaactctt
agcaattggaagcataaagtagggaaatcagcatcaagacgagcaaggtga
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integrated database retrieval system
