Populus trichocarpa (black cottonwood): 7483260
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Entry
7483260 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7483260 isoform X1
KO
K13095
splicing factor 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7483260
Spliceosome [BR:
pop03041
]
Complex A
Other components
Complex A specific factors
7483260
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Gene cluster
GFIT
Motif
Pfam:
KH_1
SF1-HH
Motif
Other DBs
NCBI-GeneID:
7483260
NCBI-ProteinID:
XP_024449770
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Position
1:587063..592139
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AA seq
768 aa
AA seq
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MSVKKVDQTSAVELQSIKMTATSSSSGASTTSGPKVSLFAAKSGFVIPKNKLLGSLVSIV
KGGKKPGSKNAVNGESTNQEQVQRKTKWGPDLTQDASVKRGRALAYQIRVDQIVQQLELG
IPEPGRDGDSHDSNELEDPKSSIPQIHTKNSEILELEKQEAIGEILILNPSYKAPPNYKP
LLKETTVPIPVKEYPGYNFIGLIFGLGSETQKRLEKETGAKIQVHGSNVHTGEKVEISPS
DGNETKVAYEELSVHVTADTFEKVDAAVVLIELLITSVSGNLAAGDNANVSQNQAASTAF
MVSTAVNQGVVLSFTPQQGQFQYQNSWLPAATPLHPPPGLIFPQTSSAPVLNNPIPLQSA
SFNSSTMPSLFGPRLAQAFSNPYQPRNFPMPTPQPQSFTGSQPHPTGLYSVARPPLLQPS
SSGSHDGLLVPSGWSGSPASVPASLGFVNMGQTTTPIVPSPGPWPTVPQLGFPSNAPPPN
AANMVSPVTFPPGPSSLQSHSVSMNHPTLIQSSLVAPLPISSINPVLGSTPISGVVGAFS
GTTSNFASMRSPTITDAKIQHSGPGDFTFQPHHLQNPAPQIAPRLSSHHAAQNGPLPRPM
MQSPAPQGPPFHFEVPNSTPLPGRQMFPRPQVSNQMGQVPFVGNPTGPSLPPSLPAFSNA
NSFGQPVMQMVSRNLSSTPHIPYLTGPLPPRPGNPLQLQQNYPVPIAPRGQSFAPNQQPF
ISLASARPASFHGGQHVYDPFSPTSVSTASQRQGANLGEGRKPENDPL
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaagaaggtagaccagacatctgcagttgagcttcaaagtattaagatgact
gcaacaagttcttcatccggtgcatcgacaactagtggtccaaaggtgtctttatttgca
gctaagtcagggtttgttatccctaaaaataaacttttgggttcattagtttccatcgtc
aaaggaggtaaaaagccgggtagtaaaaatgcagtgaatggagaaagtaccaatcaggaa
caggttcagaggaaaaccaaatggggtcctgatttaacacaagatgcttctgttaaaagg
ggaagagccttggcataccagattagagtggatcaaattgtgcaacaactggaattggga
attccagaacctgggagggatggagactcacatgactccaatgagcttgaagatcccaaa
tcttcgattccacaaatccatactaagaactctgagatcttggaacttgaaaaacaggaa
gctataggtgagatacttatattgaatccaagctacaaggctccacccaattataagcct
ttgctaaaagagaccacagttcccatccctgtcaaggagtatcctggatataattttatt
ggtctaatatttgggcttggaagcgagactcagaagcgattagaaaaggaaactggagcc
aaaatacaagtacatggttccaacgtgcatacaggagagaaggttgagatttctccatct
gatggcaatgagactaaggttgcttatgaggagttgagtgttcatgtaacagccgacaca
tttgagaaagttgacgcagctgttgtcctgattgaattgctaatcacctcagtatcagga
aatttagcggctggggataatgcaaatgttagtcagaatcaggcggcctctactgctttt
atggtctctactgctgtaaaccaaggagtggtgctatcttttactcctcaacaaggccag
ttccaatatcaaaattcatggctccctgctgccacacctctacatccacctccgggctta
attttccctcagacttcttcagcaccagttttaaacaatcctatacctttacagtcagca
tctttcaattcttcaaccatgccttcattattcgggcctagactggcacaggccttttca
aatccatatcagcctagaaattttcccatgcctactccacagcctcaatcttttactggt
agccagccccacccaacagggctgtactctgttgcaaggccaccattacttcaaccctcg
tcaagtggttcacatgatgggcttttagtcccttctgggtggtctggatctcctgcaagt
gttccggcatcattaggttttgtcaacatgggacaaacaacaactcctatagttccctca
cctggtccatggcctactgttccacagctaggttttccatccaatgcaccacctccaaat
gcagctaatatggtttctcctgtaaccttcccaccgggaccatcctctctgcaatcacac
agtgtttctatgaatcatcctaccctaatccaatcttcactggttgctcctttgccaatt
tcatccataaacccggtacttggttccacgccaatttcaggagttgtaggagctttttct
ggaactacctcaaattttgcttccatgagatcacccacaataacagatgcaaaaatacag
cactctggtcctggtgattttacttttcaaccacatcatctgcagaatccagctccccaa
atagctcccaggcttagcagtcatcatgctgctcaaaacggtccacttcctagacccatg
atgcaatcgccagcacctcaaggaccacctttccacttcgaggtccctaattcaactcct
ctacctggcaggcagatgtttcctagaccacaggtcagcaaccaaatgggtcaagtcccc
tttgttggaaatcctactggtccctcgcttccccccagccttccagcattttcaaatgca
aattcatttggacaaccagtcatgcagatggtgtcgaggaacttaagttcaactccccac
ataccctatttaacaggtcctttacctcccagaccgggaaaccccttgcaacttcagcag
aattatccagttccaatagctcctcgaggacaatcatttgctccgaatcagcagcctttc
atctccttggcatctgctagaccagcttcattccacggaggtcagcatgtttatgatcca
ttttcacctacttctgtgtcaactgcgtctcaacggcaaggagctaatctaggagaggga
agaaagccagagaatgatccactgtaa
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