Populus trichocarpa (black cottonwood): 7485083
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Entry
7485083 CDS
T01077
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1 isoform X3
KO
K14411
RNA-binding protein Musashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7485083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7485083
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7485083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
7485083
NCBI-ProteinID:
XP_002300356
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Position
1:complement(37938952..37943016)
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AA seq
481 aa
AA seq
DB search
MQGMESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRVTGRARGFGFVVFADP
IVAERVIMEKHVVDGRTVEAKKAVPRDDQHILSRNTSSIHGSPGPGRTKKIFVGGLASTV
TENDFKKYFEQFGIITDVVVMYDHNTLRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE
VKRAVPKELSPGPSRSPLMGYNYGLTRANNFLNAYAQGYNMNSIGGFGMRMDSRFNPLAT
GRSGFAPFSTAGYGMSMNLEPALSPSYGGGSNFSNTPAYGRISSPYYSGNPSRYSTPVGY
GEGNARNDSLLSPTTWNVWGNGSHNTATNPASPGPLLGSRTGNFGVSFGNSGSNWGTSPV
SAQGRGSASGYTTGSMGYGSGDNNYGLSGAGYVRNSGTGAPPTSSFSGSAGGYEGSYGDL
YRSGSVYGDSTWQSATPELDGCGSFGYGLGDVASDVTTKSSEGYIGSYGVTSRQSNRGIA
T
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggatggaatcagatcttggtaagctcttcattggtgggatttcatgggacact
gatgaggaacgtcttaaggaatattttagcaagtatggggaagtggttgaggctgtgatc
atgagagatcgtgttacaggccgtgcccgtggctttggttttgttgtctttgcagatcct
attgttgccgagagggtcatcatggagaagcacgtggttgatggccgcacagttgaagca
aagaaggctgttcctagggatgaccagcacattttaagtagaaacactagtagtattcat
ggttctccaggtcctggacgcaccaaaaagatttttgttggaggccttgcgtctacggtt
acagagaatgacttcaagaagtactttgagcagtttggtattattactgatgttgtagtg
atgtacgatcacaacactctgaggccaagaggctttggcttcatcacttatgattctgag
gaagcagtggacagagttctgcataaaacatttcatgaactcaatggtaaaatggttgag
gtcaagagggcagtcccaaaggagctatcaccaggtcctagtcggagccctctgatgggg
tataactatggtttgactagggccaacaacttccttaatgcatatgctcagggatataat
atgaactctattggaggttttggaatgaggatggatagtaggtttaatccactcgccact
ggtcgaagtggatttgctccctttagcaccgctggttatgggatgagtatgaatttagag
ccagccttgagtccaagctacggtggaggttccaactttagtaacactcctgcatatggg
cggatctcaagtccttattatagtgggaatccaagcaggtacagcacaccagtaggttat
ggtgaggggaatgcaagaaatgattctctcttaagccctactacttggaatgtctggggc
aatggcagccacaatactgccacaaatcctgccagccctggtcctttattgggctccaga
actggaaattttggagtttcatttgggaatagtggatcgaattggggcacttctcctgta
tcagctcaaggcagaggaagtgcttctggctatactactggcagcatgggttatgggagt
ggtgacaacaattatggtttgagtggggcaggatatgtaagaaacagtggcactggtgca
ccaccaacatcatcattctctgggtcagctggtggttatgaggggtcctatggggacctt
tatcgcagtggttctgtttatggtgattcaacttggcaatctgctactcctgagcttgat
ggttgtggttcatttggttatgggctcggtgatgtagcttcagatgttacaactaagagt
tccgagggttatattggaagttatggtgttacaagtagacaatcaaatagaggaattgct
acctag
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