Populus trichocarpa (black cottonwood): 7486889
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Entry
7486889 CDS
T01077
Name
(RefSeq) pentatricopeptide repeat-containing protein At5g04810, chloroplastic
Organism
pop
Populus trichocarpa (black cottonwood)
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Gene cluster
GFIT
Motif
Pfam:
PPR_2
PPR_1
PPR
PPR_3
PPR_long
ATP13
RRM_1
MRP-S27
Mtf2
MA3
RRM_7
Motif
Other DBs
NCBI-GeneID:
7486889
NCBI-ProteinID:
XP_024462613
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Position
8:861517..869041
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AA seq
961 aa
AA seq
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MDILPLSTIPHFPHCPPPFSSNTTTTTTTASISFSLKPPPPPPPEPTNSSSIRRPKSLNP
TPAPTPTPTPTPAPTTPKIPQNPLKTLLNPSKPQITSSSATSTTDPLSLSTKLRLSSKLS
HPPPPPPPLETTRTPEAETQETRKVENEAPKTDFCQKGKIFIGNLPNWIKKHELSEFFRQ
FGPIKNVVLINGHNETERNAGFGFIIYDGPTAEKSAMKAEEFDGMEFHGRVLTVKLDDGR
RLKAKAEERKNWVDGEDGGDYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKP
ARREFGLMVGYYARRGDMHRARQTFESMRARGIYPSSHVYTSLIHAYAVGRDMEEALSCV
RKMKEEGVEMSLVTYSIVVGGFAKIGNAEAAEHWFKEAKERHTNLNAIIYGSIIYAYCQS
CNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISY
GCLINMYTKIGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIE
DGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRR
ALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMN
GYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPR
NTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTI
QEMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSR
ATVAEAYIYSGILSICREMIESELTVDMGTAVYWSKCLRKIEGTGGELTEALQKTFPPDW
NAHHSPSPEANYESGIESDIDDEPSNDGDNNMFLAGVNDGDSEDDIDDHDENKDFKQRLW
V
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggatattttgcctctctccaccatcccgcactttcctcattgcccccctcctttctcc
tccaacaccaccaccaccacaaccaccgcttccatttctttctccctcaaaccaccacct
ccaccgccaccagaacccaccaattcttcctctatccgccgtcccaaatcactcaatccc
acccccgccccaacccccaccccaacccccacccccgcccccacaactcctaaaatcccc
caaaacccactcaaaaccctccttaacccctccaaaccccaaataacaagctccagtgcc
actagcaccaccgaccctctttctctctccaccaaactccgcctctccagcaaactctct
cacccaccaccgccgccgccgccacttgaaaccactcgaaccccagaagctgaaacccaa
gagactcgaaaagtagaaaatgaagcccccaaaactgatttctgccaaaaagggaagatc
tttattggaaatttaccaaactggataaaaaaacacgaactttctgaattctttcgccaa
ttcggtcctataaagaatgtagttttgataaatggtcataatgagactgaaaggaatgct
ggtttcgggtttattatctatgatggtccaactgcagagaagtctgcaatgaaagctgag
gaatttgatggaatggagtttcatgggagggttttgactgtgaaattggatgatgggaga
agattgaaggcgaaagcagaggaaaggaagaattgggttgatggagaggatgggggtgac
tataggtctaaatggcacgaagaaagagaagggtctacaaaggcttttcggaaggtttta
gacacgcaaccggagaattggcaggcagttgttagtgctttcgaaaggattaagaagcct
gctagaagggagtttggattaatggtgggttactatgcgaggcgaggggatatgcatcgt
gcacgacaaacttttgagagcatgcgagcaaggggaatatatccgagttcacatgtctat
acaagccttattcacgcttatgcagttggtagagacatggaagaagcactgtcttgtgtt
aggaaaatgaaggaagagggtgttgaaatgagcctggtgacatatagtatagttgttgga
ggatttgccaaaattggcaatgctgaagctgcagagcactggtttaaggaggccaaagag
aggcatacaaatttgaatgcaatcatttatgggagcattatatatgcttattgtcagtca
tgcaatatggatcgagctgaatctttggtgagggagatggaagaagaaggtatagatgct
cctattgacatatatcataccatgatgaacggttacactatgattggaaatgaagaaaaa
tgcctgattgtattcaaaaggcttaaggaatgtggatttgctccttcagtgattagctat
ggatgtctcatcaatatgtacaccaagataggtaaagtttctaaagccctggaggttagc
aaaatgatggaatcagctggcataaagcataacatgaagacgtattccatgttgatcaat
gggttcttgaagttaaaggattggaccaatgcatttacagtttttgaagatgttatcgaa
gatggtttgaaacctgatgtggttctctataataacattatcaaagcattctgtggaatg
ggaaatatggatcgtgccatccatatggtgaaggaaatgcagaagaaaagacatcggcct
acttcacgtacatttatgcccattatacatggatttgcaagagctggggaaatgaggagg
gccctagaaatttttgatatgatgaggcggagtgggtgcattccaactgtgcacaccttc
aatgctttggttctcggccttgttgagaagcgtcagatggagaaggctgttgaaatattg
gatgagatggcattggcaggtgtaagtccagatgaacacacatacacgacaatcatgaat
ggttatgcagcattaggtgatactggaaaggccttcgagtattttaccaaattaagaaat
gaaggactagaacttgatgtgtttacatatgaggcattgctcaaggcatgttgcaagtca
ggcaggatgcaaagtgctttagcagttacaagagaaatgagtgctcaaaatatcccaaga
aacacctttgtctataacatattaatcgatggatgggctcgaagaggtgatgtttgggag
gctgctgaccttatgcagcaaatgaagcaagaaggggttcaacctgatattcatacatat
acatcctttataaatgcttgttgcaaggctggagacatgctgagagcaacaaaaacaata
caagaaatggaggctttaggagtgaagccaaatgtgaaaacctacaccacattgattcat
gggtgggcatgtgcttctcttccagagaaagcattgcgctgctttgaagagatgaagttg
gctggattaaagcctgataaagctgtgtaccattgcttaatgacatcattgttgtcaagg
gctactgttgctgaagcatacatttactctgggattctgtccatttgcagagaaatgata
gaatctgagttgactgtagatatggggactgcagtttactggtccaaatgtttacgcaaa
atcgaaggaacgggaggagagctcacagaagctttacagaagaccttccctccagattgg
aatgcgcatcactctccctctcccgaggcaaactacgaatcaggtattgaatcagatatt
gatgatgaacccagcaatgatggtgataataacatgtttttggctggtgtgaatgatgga
gatagcgaagatgacatcgatgatcatgatgagaacaaggatttcaaacagagattatgg
gtttaa
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