Populus trichocarpa (black cottonwood): 7487007
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Entry
7487007 CDS
T01077
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7487007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7487007
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
7487007
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
TFIIA
WD40_like
PROPPIN
FAM60A
WDR54
Motif
Other DBs
NCBI-GeneID:
7487007
NCBI-ProteinID:
XP_002299210
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Position
1:1996538..2005463
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AA seq
771 aa
AA seq
DB search
MMYGGDPQQQQQQQQHHHHQQLQQQQQQQQQQQQQQQQQQQQQQQHQQQQQHHHHHQHMQ
HQPPPGNDFHRGPPPPPMMRQPSASSTTLSPLDYHHQHHPPQAAPGPPHPNYEGHGDGYG
GKRMRKLTQRRAVDYTSTVVRYIQTRMWQRDSRDRTILQHTPAAAIDVLPTVAYSDNPST
SFAAKFVHTSLNKNRCSINQVLWTPNGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAI
RSMVWSHNDNWMVSGDDGGAIKYWQSNMNNVKANKSAHKESVRGLSFCRTDLKFCSCSDD
TTVKVWDFARCHEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELCSFH
GHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY
FVSGSYDGSIFHWLVGHETPQIEVSSAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNR
PGDTARDKFNVGQNQGYGEQNPAFGGRFPGNFPVPEPPTTPGPFPPGLTRNEGTIPGVGA
AMPLSIQSLDASQGEKQPLPISMPFGSPPLPPGPHPSLLAANQQQGYQQNPQQMPQQQHQ
PHPQHMPPLPMPPPNMQQLQPPSHVPLLPHMHLPRPPQMPPHGMPSPIPSSMPGSLPSSL
PGPMGMQGTMNQMVPSLQQGHFMGMNPLHAGSLPTSAAPTVGGGFPNGLPNMQGPSNASG
GQMYSQGGPFNRPQGGQMPMMPGFNPYQSGNQSGMPPPLPPGPPPHSQTPQ
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggtggtgatcctcagcaacagcaacagcaacagcaacaccaccaccaccag
cagctgcagcaacagcagcagcagcagcagcaacagcagcagcagcagcagcaacagcag
cagcagcagcagcaacaccaacaacaacaacaacaccaccaccaccaccaacatatgcaa
catcaaccgccacctggtaatgacttccaccgaggccccccgccaccgccgatgatgcgg
caaccctccgcttcatcaacaactcttagtcctctcgattaccaccaccaacaccaccct
ccgcaggccgcccccggtcctcctcatcctaattacgaaggtcatggtgatggttatggt
ggaaaaaggatgaggaagcttacgcaaaggagagctgttgattatacaagcacggttgtt
aggtatattcagactcgtatgtggcagagggactcgagggacaggacaatattgcaacat
accccagcagctgcaattgatgtgttgcctacagttgcctattctgataatccatcaaca
agctttgctgcaaaatttgtccatacatctctaaacaaaaaccgttgttcaattaatcag
gttttgtggactccaaacgggagacgtctaatcacaggttctcaaagtggggaattcacc
ctttggaatggacagtcatttaattttgaaatgattcttcaggctcatgatcaagcaatc
aggtctatggtatggagccacaatgacaattggatggtctccggtgatgatggtggtgca
attaagtattggcagagcaacatgaataatgttaaggccaataaatctgctcataaagaa
tcagtgcgaggcttaagtttctgtaggacagatttgaagttctgttcctgctctgatgac
actactgttaaagtttgggactttgctcggtgtcatgaagagcgttcattaacgggccat
ggttgggatgtgaagagtgttgattggcaccctacaaaatctctactagtgtcaggtggg
aaagacaacctagtaaaactctgggatgctaaatctggaaaagagctttgctcatttcat
ggccacaaaaatactgtgctttgtgtcaaatggaaccaaaatggtaactgggtgctgact
gcttcaaaagatcaaatcatcaagctttatgatataagggcaatgaaggagcttgaatct
ttccgtgggcatcggaaggacgtgactgcgttggcttggcatccattccatgaagagtac
ttcgtcagtgggagttacgatggatccattttccattggcttgtggggcatgaaacccct
cagattgaagtttccagtgctcatgataatagtgtttgggatcttgcatggcatccaatc
ggatatcttctttgcagtggtagcaatgatcacacgacaaagttttggtgccgaaatagg
ccaggagacactgcccgtgataaatttaacgtgggtcaaaaccaaggttatggtgaacaa
aatcctgcctttggtggccgcttccctggcaatttccctgtacctgaaccaccaacaact
ccaggaccatttcctcctggattgactcgaaatgaaggaactattccaggtgttggagct
gcaatgccactatcgattcaatctcttgatgcatcccagggagagaagcagcctcttcct
atttctatgccctttggatcgcctcctcttcctcccggtccacatccgtcgcttcttgct
gctaatcagcagcagggatatcaacaaaatcctcagcagatgccacaacagcaacaccaa
ccacaccctcagcacatgcctcctttgcctatgccgcctccaaatatgcagcagctacag
cctccatcccacgtacccctgctccctcatatgcatctacctcgccctccacaaatgccc
cctcatggcatgccttcaccaatcccatcttccatgcccggatctttaccttcatcactg
cctggtccaatggggatgcaagggacaatgaatcagatggtaccttcattacaacaaggc
cattttatgggcatgaatccattgcatgcaggatccttacccacaagtgccgccccaaca
gttggtgggggttttccaaatggcctgccaaatatgcagggcccatcaaatgcaagcggg
ggccaaatgtattcacagggtggtccattcaaccgtccacaaggtggacagatgccaatg
atgcctgggtttaatccttatcagtctgggaaccaatctggtatgcctccaccactacca
cctggtccaccaccacattcacagacacctcagtag
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