Populus trichocarpa (black cottonwood): 7488856
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Entry
7488856 CDS
T01077
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7488856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7488856
Spliceosome [BR:
pop03041
]
Complex A
U1 snRNP components
U1 related factors
7488856
Complex B
7488856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
7488856
NCBI-ProteinID:
XP_002320019
LinkDB
All DBs
Position
14:749439..764267
Genome browser
AA seq
1019 aa
AA seq
DB search
MASNPQSSGGQFRPMVPTQQGQPFIQVASQQFRPVGQGMPSSHVGMPAAQSQHLQFSQPI
QQLPPWPNQPGAPSAQALSMPYGQLNRPLTSSQPQQNAPPLSNHMHVVGTSGVPNSSPYA
FAPSSFGLTQNSASALPQFPPMSQMHAHVVPMGGQPWLSSGSHGASLVPPVQPTVVQPSI
SSSSDSTVAVSSNSQQSLSDWQEHTASDGRRYYYNRRTKQSSWDKPFELMTPIERADAST
VWKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQQTVGQGNQSETDAASNVPTAVA
VTSSETSTTAVSVSSSSVMLPGVSSSPISVTAVANPPPVVVSGSPALPVAHSTTASAVGV
QPSVTPLPTAVSVGTGAPAAAVDAKTTSLSSIDNLLSQSAANSVDGASMMDTAEFNKVSM
DMGKTNASPLEEKTPDEEPLVFANKLEAKNAFKALLESANVQSDWTWEQTMREIINDKRY
AALKTLGERKQAFNEYLGQRKKLEAEERRVRQKKAREEFAKMLEECKELTSSMKWSKAIS
LFENDERYKALERARDREDLFDSYIVDLERKEKEKAAEDRRRNVAEYRKFLESCDFIKAS
SQWRKIQDRLEDDERCLCLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRAERKNRDE
FRKLLEEHVASGSLTAKTHWLDYCLKVKDLPQYQAVATNTSGSKPKDLFEDVSEELEKQY
HDDKTRIKDAMKLGKITMVSTWTFEDFKGAVADDIGSPPISDINLKLLYEELVERAKEKE
EKEAKKQQRLADDFTKLLYTLKEVTPSSNWEDCKPLFEESQEYRSIGEESLSKEIFEEYV
THLQEKAKEKERKREEEKARKEKEREEKDKRKEKERKEKEKEKEKEREREKGKQRTKKNE
TDGENVDASDGYGHKDDKKREKDKDRKHRKRHQSAIDDVNSDKDEKEESKKSRKHSSDRK
KSRKHTYTPESDGESQHKRHKRDHRDGSRRNGSNEELEDGELGDDVEIRKQHMAAEIDI
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatcctcaatcttctggcggacagtttcgaccaatggttccgacacagcaa
gggcagccattcattcaggtggcttcccaacagtttcggccagttggacaaggcatgcct
tcttcacatgttgggatgccagctgctcaaagtcagcacctgcagttttctcaaccaatc
cagcagttaccgccatggccaaatcagcctggggcaccttcggcacaggctttatcaatg
ccttatggtcaactaaacaggcctctgacatcatcacagccccagcaaaatgcccctcca
ttaagtaatcatatgcatgtggttggcacctctggagttcctaactcctcaccatatgcc
tttgcaccatcttcttttggcctgacacaaaacagtgccagtgcattgccccagttccca
ccaatgtctcaaatgcatgcacatgttgtacctatggggggacagccttggttgtcctct
ggaagtcatggtgcttcacttgttcccccagtccagcctactgttgtccagccttctata
tcttcttcctcagattcaacagtagctgtttctagcaatagtcaacagtctttgagtgat
tggcaggaacatacagcgtctgatgggaggaggtattattacaacaggagaacaaaacaa
tctagttgggataagccctttgaattgatgacgccaattgagagggctgatgcatcgact
gtttggaaggaattcacaactcaagaggggaagaagtattactacaacaaggttacaaag
caatctaagtggtcaattcctgaggaattgaagatggctcgtgaacaggcgcaacaaaca
gttggccaggggaatcaatcagaaaccgacgcagcttcaaatgtcccaactgctgttgct
gttacctcaagcgaaacatccaccacagctgtttcagttagctctagctctgtgatgtta
ccaggggtctcttcaagcccaatttcagtcactgctgtcgctaatccacccccagtggta
gtttctggatcaccagctcttcctgttgcacattctaccacagctagtgctgtaggtgtc
caaccctctgtgactcctttacccactgctgtttcagtaggtactggagctcctgctgca
gcagttgatgcaaagacaacatcactgagtagcattgataatctattatctcaaagtgct
gcaaattctgtagatggagcatctatgatggatactgcggaattcaataaagtatcaatg
gatatgggaaaaactaacgccagtcctttggaggagaagaccccagatgaggaaccttta
gtattcgccaacaagctggaggcaaaaaatgcattcaaagctcttctagaatccgcaaat
gtccagtctgactggacttgggagcagacgatgagagagatcattaatgacaaaagatat
gctgctttaaaaactcttggtgagcgaaagcaagcattcaatgagtacttaggtcaaagg
aaaaaactagaagctgaggagaggcgtgtaagacagaaaaaggctcgggaagagtttgcc
aagatgttggaagagtgtaaggaattgacttcatccatgaagtggagcaaagctataagt
ctgtttgaaaatgatgaacgatacaaagctcttgagagagccagagaccgagaggatctt
tttgacagctacattgtggaccttgagaggaaggaaaaggagaaggctgctgaagaccgt
aggaggaatgtagcagaatatagaaaatttctggagtcctgtgatttcatcaaggccagc
agccaatggcggaaaattcaagatcgcttagaggatgatgagcggtgcttgtgtcttgaa
aaacttgaccgtttactcattttccaggactatattcgtgacttggagaaagaggaagag
gaacaaaagaagatacaaaaggaacaattgagacgggctgaaaggaaaaatcgtgatgaa
tttcgcaaattgttggaagaacatgttgcttctggctcccttacagctaaaactcactgg
cttgactactgtttgaaggttaaggatttgcctcaatatcaggctgttgcaacaaacacg
tctggctcaaagccaaaagatctgtttgaggatgtttctgaagaactagagaaacaatat
catgatgataaaactcgaataaaggatgcaatgaagctgggcaagattaccatggtgtca
acatggacatttgaagacttcaagggtgctgttgctgatgatattggttctccaccaata
tcagatatcaacctaaagcttttatacgaggagctagttgaaagagccaaggagaaggag
gagaaagaagctaaaaaacagcaacgtcttgctgatgatttcactaaattactgtatact
cttaaggaagtaactccttcttctaactgggaggattgcaaaccgctttttgaggagagc
caggaatacaggtcaattggggaagagagtttgagtaaggaaatttttgaagaatatgtc
acacacttacaggaaaaggccaaagagaaggaacgcaagcgtgaggaagaaaaggccagg
aaggagaaagagagagaggaaaaagacaagagaaaagagaaggagaggaaggagaaggag
aaagagaaagagaaagaacgtgaaagggaaaaaggaaagcaacggacaaaaaagaatgaa
acagatggtgaaaatgttgatgcaagtgatggttatggccacaaggatgacaaaaagagg
gaaaaggacaaagataggaaacaccggaaacggcatcaaagtgccattgatgatgtaaat
tctgataaggatgagaaagaagagtctaaaaaatcacgcaagcatagcagtgaccgtaaa
aaatctagaaagcacacatacacacctgaatcagatggtgaaagccagcataaaaggcac
aagagagatcaccgtgatggttcccgcagaaatggcagtaatgaggagcttgaagatggg
gagcttggcgatgatgtggaaatccgcaaacaacatatggcagcggagattgatatctga
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