KEGG   Populus trichocarpa (black cottonwood): 7489348
Entry
7489348           CDS       T01077                                 
Name
(RefSeq) ubiquitin receptor RAD23d
  KO
K10839  UV excision repair protein RAD23
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03420  Nucleotide excision repair
pop04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    7489348
  09124 Replication and repair
   03420 Nucleotide excision repair
    7489348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:pop03051]
    7489348
   03400 DNA repair and recombination proteins [BR:pop03400]
    7489348
Proteasome [BR:pop03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    7489348
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      7489348
SSDB
Motif
Pfam: XPC-binding UBA ubiquitin Rad60-SLD Rad60-SLD_2 CUE Dsc3_N Ubiquitin_4 Crinkler TECR_N
Other DBs
NCBI-GeneID: 7489348
NCBI-ProteinID: XP_052312628
LinkDB
Position
10:complement(14353041..14357208)
AA seq 396 aa
MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG
ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPTPKAPTTSAPMSTAPPASTVTSALPTSVP
SPAPAPAPAPAPVSAPAPAPVSSVIAESESGVYGQAASNLVAGNNLEGAVQQILDMGGGS
WDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQAPAAQPRQQPAQPTT
VPAGGPNANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQALRAMVQANPQILQPMLQE
LGKQNPHLMRLIQEHQDDFLRLINEPVEGGEGNVSGPLAAAMPQSVTVTPEEREAIERLG
AMGFDPALVLEVYFACNKNEELAANYLLDHIHEFED
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgaagatttttgttaagactttgaaaggcagcacttttgacatcgaagttaaacctgga
gacacggttgctgatgtcaaaaagaacatagaaacagctcaaggggcatctgtttatcct
gctgaacagcaaatgcttatctatcaggggaaagttcttaaagatgacaccacgttaggt
gaaaataaagttgctgaaaatagttttgttgttatcatgttatcgaaggctaagagctca
tctggtgagggctcaactacatcagctgctcctacccctaaggcacccacaacaagtgcc
ccaatgtcaacagcacctccagcttccacagtgacttctgcactgccaacatctgttcct
tcccctgctccagctccagctccagctcctgctccggtttctgctccagctccagctccg
gtttcttcagttattgctgaatcagagtctggtgtatatggccaagcagcatctaatctt
gttgcgggaaataacttggagggagcagtccagcaaattcttgatatgggtggaggttct
tgggatagagatactgttgttcgtgctcttcgtgctgcttacaataatccagagagagcc
gttgaatatttatatactggcatcccagaacaagcagaagccccacctgtggctcaagtc
cctgtaagcgagcaagctcctgcagcccagcctcggcagcagccagcacaaccaactaca
gttcctgctggtggaccaaatgcaaatcctttagacctcttcccccagggccttcccaac
attggttcaggggctgctgaagcaggaactcttgattttttgaggaacagtcaacagttc
caagccttgcgagctatggtgcaggctaacccacagatactgcagcctatgctccaagaa
ctgggaaaacaaaatcctcacttaatgaggctcattcaagagcaccaggatgactttctc
cgcctgatcaatgaacctgttgaaggtggagaggggaatgtatcggggccgcttgctgca
gcaatgccgcaatcagtaacagtcacacctgaggagcgcgaagcaatagaacgtcttgga
gctatgggttttgatcctgcacttgttttggaggtgtattttgcctgcaacaagaacgag
gagctggcagccaactacctcttagatcacatacatgagtttgaggattga

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