Populus trichocarpa (black cottonwood): 7489348
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Entry
7489348 CDS
T01077
Name
(RefSeq) ubiquitin receptor RAD23d
KO
K10839
UV excision repair protein RAD23
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03420
Nucleotide excision repair
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7489348
09124 Replication and repair
03420 Nucleotide excision repair
7489348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pop03051
]
7489348
03400 DNA repair and recombination proteins [BR:
pop03400
]
7489348
Proteasome [BR:
pop03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
7489348
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
7489348
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
Rad60-SLD
Rad60-SLD_2
CUE
Dsc3_N
Ubiquitin_4
Crinkler
TECR_N
Motif
Other DBs
NCBI-GeneID:
7489348
NCBI-ProteinID:
XP_052312628
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Position
10:complement(14353041..14357208)
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AA seq
396 aa
AA seq
DB search
MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG
ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPTPKAPTTSAPMSTAPPASTVTSALPTSVP
SPAPAPAPAPAPVSAPAPAPVSSVIAESESGVYGQAASNLVAGNNLEGAVQQILDMGGGS
WDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQAPAAQPRQQPAQPTT
VPAGGPNANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQALRAMVQANPQILQPMLQE
LGKQNPHLMRLIQEHQDDFLRLINEPVEGGEGNVSGPLAAAMPQSVTVTPEEREAIERLG
AMGFDPALVLEVYFACNKNEELAANYLLDHIHEFED
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgaagatttttgttaagactttgaaaggcagcacttttgacatcgaagttaaacctgga
gacacggttgctgatgtcaaaaagaacatagaaacagctcaaggggcatctgtttatcct
gctgaacagcaaatgcttatctatcaggggaaagttcttaaagatgacaccacgttaggt
gaaaataaagttgctgaaaatagttttgttgttatcatgttatcgaaggctaagagctca
tctggtgagggctcaactacatcagctgctcctacccctaaggcacccacaacaagtgcc
ccaatgtcaacagcacctccagcttccacagtgacttctgcactgccaacatctgttcct
tcccctgctccagctccagctccagctcctgctccggtttctgctccagctccagctccg
gtttcttcagttattgctgaatcagagtctggtgtatatggccaagcagcatctaatctt
gttgcgggaaataacttggagggagcagtccagcaaattcttgatatgggtggaggttct
tgggatagagatactgttgttcgtgctcttcgtgctgcttacaataatccagagagagcc
gttgaatatttatatactggcatcccagaacaagcagaagccccacctgtggctcaagtc
cctgtaagcgagcaagctcctgcagcccagcctcggcagcagccagcacaaccaactaca
gttcctgctggtggaccaaatgcaaatcctttagacctcttcccccagggccttcccaac
attggttcaggggctgctgaagcaggaactcttgattttttgaggaacagtcaacagttc
caagccttgcgagctatggtgcaggctaacccacagatactgcagcctatgctccaagaa
ctgggaaaacaaaatcctcacttaatgaggctcattcaagagcaccaggatgactttctc
cgcctgatcaatgaacctgttgaaggtggagaggggaatgtatcggggccgcttgctgca
gcaatgccgcaatcagtaacagtcacacctgaggagcgcgaagcaatagaacgtcttgga
gctatgggttttgatcctgcacttgttttggaggtgtattttgcctgcaacaagaacgag
gagctggcagccaactacctcttagatcacatacatgagtttgaggattga
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