Populus trichocarpa (black cottonwood): 7489480
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Entry
7489480 CDS
T01077
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7489480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7489480
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
7489480
Complex C
U5 SnRNP specific factors
7489480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
Roc
Dynamin_N
Ras
TsaE
Septin
Motif
Other DBs
NCBI-GeneID:
7489480
NCBI-ProteinID:
XP_024445990
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All DBs
Position
18:13134671..13140226
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AA seq
989 aa
AA seq
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MDDNLYDEFGNYIGPEIESDRESDGEEEDEELPDKPHEDEEESDGEEAVHASNGWLTAPN
DVDMDNQVVLAEDKKYYPTAEEVYGPGVETLVNDEDEQPLEQPIIKPVRNIKFEVGVKDS
STYVSSQFLVGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHTPTFDINSEKHIRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLV
VDAAEGVMVNTERAIRHAIQEQLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
ISAVSSTAGNVQVIDPAAGNVCFAGATAGWSFTLHSFARLYLKLHGIPFDAEKFASRLWG
DMYYNPEDRTFKKKPPASGAERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAEFGVTLPN
SAYKLNVRPLLRLACSQVFGSASGFTDMLVKHIPSAKVAAARKVDHTYTGPKDSMIYQAM
LDCDPAGPLMVNVTKLYPKSDCSSFDAFGRVYSGKIMTGQSVKVLGEGYSPEDEEDMTVK
EVTKLWVYQARYRLPISMAPPGSWVLIEGVDASIMKTATLCNVNYNEEDVYIFRPLQFNT
LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDL
RELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIENGV
VSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGAVKD
SIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMAT
PRLMEPVYYVEIQTPIDCLTAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFE
TDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMS
EDVSINKFFDEAMVVELAQQAADIHQQMM
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaatttgtatgatgagtttgggaactacattggtccggaaatagagtcggac
cgagagagcgatggtgaggaagaagatgaagaacttccagacaagcctcatgaagacgag
gaggaatctgacggtgaagaggcagttcatgcttccaatggttggcttactgcccctaat
gatgttgacatggataaccaagttgtccttgctgaggacaagaagtactacccaaccgcg
gaggaggtttatggtccaggtgttgaaacgttggttaatgatgaagatgagcagcctctt
gagcaaccgataattaagcctgttaggaacatcaagtttgaggttggggttaaggattcc
tcaacttatgtttccagccagtttcttgttggtcttatgtcaaatccctctttagtacgc
aacgttgccctcgtgggccatctacagcatgggaagacagtttttatggacatgttggtt
gagcaaacacatcatacgccaacttttgatataaatagcgagaaacatattaggtacaca
gatacaaggattgatgagcaagaaagaaggatatctatcaaggcagttccaatgtcactt
gtccttgaggatagcaattcaaagtcgtacctctgtaacatcatggacacccctggtcat
gtgaacttctctgatgaaatgactgctgccctcaggcttgctgatggtgcagtgttggtt
gtggatgctgctgaaggagtgatggtaaacacagagagggccatacgccacgcaattcag
gaacagctgcctattgttgttgtgatcaataaggttgacaggctcataacagagctcaaa
ttgcccccaaaggatgcgtatcacaagctaaggcataccatagaagtcattaacaaccat
atatctgctgtctcttcaactgctggaaatgttcaagtgatagatccagctgctggaaat
gtttgttttgctggtgcaaccgcaggatggtccttcactttgcattcctttgctagattg
tatctcaaactccatggtatcccatttgatgctgaaaagtttgcatctcgtctctggggg
gatatgtattataatcccgaggacaggactttcaagaagaaacctcctgctagtggagca
gaaagatcgtttgtccaatttgtgctggaacctctctacaaaatatacagccaagtgatt
ggagaacataaaaaaagcgttgaggctactcttgctgagtttggtgttactcttcctaat
tcagcttataaattaaatgtcaggcctttgctaagactggcttgcagtcaagtttttggc
tcagcctcaggtttcactgacatgcttgttaagcatataccttcggctaaggttgctgct
gccaggaaggttgatcatacatatactgggcccaaagattcaatgatttaccaggccatg
ctagactgtgatcctgctggccccttaatggttaatgtgacgaaattgtatccgaagtca
gattgcagttcatttgatgcttttggtagggtttatagtggtaaaattatgacagggcag
tctgtaaaagttttgggagaaggctattcaccagaggatgaggaggacatgacagtaaaa
gaagtgacaaaactatgggtatatcaagctcggtataggttacccataagtatggcacct
cctggttcctgggttctcattgaaggtgtggatgcttcaattatgaaaactgcaactctc
tgtaatgtgaattataatgaagaagatgtatacatatttcgacctcttcagttcaatact
cttccagtagtgaaaactgctactgagcctctaaatccaagcgagttgcccaaaatggtg
gagggtcttaggaagatcagtaaaagctatcctctggccataactaaagttgaggagtct
ggggagcacactatacttggtaccggagagttgtacttagattctattatgaaggacctt
agggagctatattctgaagtggaagtcaaggtagccgatcctgttgtctcattctgtgaa
actgtggtggagtcctcgtcaatgaaatgctttgctgaaacacccaacaagaagaataaa
ataaccatgatcgctgagccattggagaaagggcttgcagaagacattgaaaatggtgtt
gtaagcattgactggaatcggaaagctctaggtgacttcttcaagacaaaatatgattgg
gatttgcttgcagcacgatccatatgggcttttggccctgataagcagggacctaacatt
ttgctagatgacacacttccaactgaagtggacaagggattactaggtgccgtgaaggat
tctattgttcaagggtttcagtggggtgcacgagaaggaccactttgtgatgaaccaatc
agaaatgttaagttcaagatagttgatgctaggattgcgcctgaaccacttcatcgtgga
tctggtcaaataattccaacagctcggcgtgtggcctactcagcttttcttatggcaacc
ccaaggctcatggaacccgtatattatgtggagatacaaacaccaattgactgtctcact
gcaatctatacggtgttatctcgcagacgtgggcatgttacagcagatgttcctcagcct
gggactccagcttatattgttaaggcatttttacctgtcatagaatcatttggttttgag
acggacttgaggtaccatacccaaggtcaagcatttagcctctcggtgtttgatcattgg
gctatagtccctggagatccccttgataagagcattgttctgaggccacttgagcctgca
ccaatccagcaccttgcccgtgaatttatggtgaagacaaggcgtcgcaagggaatgagt
gaagatgtgagcattaacaagttcttcgatgaggctatggtggttgagctggctcagcaa
gcagctgatattcatcaacaaatgatgtga
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