Populus trichocarpa (black cottonwood): 7491956
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Entry
7491956 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor RS2Z33 isoform X1
KO
K12896
serine/arginine-rich splicing factor 7
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7491956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7491956
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
7491956
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
zf-CCHC
zf-CCHC_5
RRM_5
zf-CCHC_3
RRM_occluded
CLIP1_ZNF
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
7491956
NCBI-ProteinID:
XP_002308490
UniProt:
B9HCB7
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All DBs
Position
6:22148606..22151765
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AA seq
293 aa
AA seq
DB search
MPRYDDRYASTRLYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDYAFVEFSDPRDADDA
RHYLDGKEFDGSRIIVEFAKGVPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWK
NKCYRCGERGHIERNCKNSPKKLTRGKSYSRSPGRSRSPHRGRSRSPSYSRGRSYSRSRS
PPPKRERSVENENRSLSPEPKSTKARKRSPTPDEGSPRPSPKSRKLDDEQDREYSGSPTG
RSRSRSRSPRDERYRSPQTNGRSRIPSPRDDRSPVDDDYEDNNRSPRDSDVSR
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgatatgatgatcgatatgccagtacgcgtctctatgttggacacctggctgct
aggacacgatcacgggatctggaacatcttttcagcaaatatgggcgagtacgagatgtg
gatatgaagcgtgactatgcatttgttgaatttagtgatcccagagatgctgatgatgca
aggcattacttagatggcaaggagtttgatggaagtcgtatcattgtggaatttgcaaag
ggggtacctcgtggttctcgagaatatttgggcagaggtcctcctccaggatctggacgc
tgctttaattgtggcattgatggccactgggctcgagattgcaaagctggagactggaag
aacaagtgttatcgttgtggggaaagaggtcatatagagagaaactgcaagaacagtccc
aagaaactcacgcggggaaagagttactctcgatcaccaggtagatcacgctctcctcac
cgtggcagaagccgcagcccaagttatagccgaggtcgaagctacagccgatcaagatcc
ccaccaccgaagagagagcgaagtgttgagaatgagaacaggtcattgagccctgaacca
aagagtacaaaggccaggaagcgcagcccaacacctgatgaaggcagcccacgcccttct
cccaaatctcgaaaactggatgatgagcaagatagagagtacagtggcagccccacggga
agaagcagaagcagaagcagaagccctcgagatgagaggtatagaagtcctcagactaat
ggtcgcagccgcattcccagtcccagggatgatagaagccccgttgatgatgattatgag
gacaacaaccgctccccgagagatagtgacgtgtcacgttga
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