Populus trichocarpa (black cottonwood): 7494532
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Entry
7494532 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 7
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7494532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7494532
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7494532
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
7494532
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GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
Pox_Ag35
Cwf_Cwc_15
Tim54
BUD22
Nop14
Motif
Other DBs
NCBI-GeneID:
7494532
NCBI-ProteinID:
XP_024455257
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All DBs
Position
4:6088943..6092241
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AA seq
379 aa
AA seq
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MRKFILEDGEGSSYPRPKRQRPSSPSSPPPPPPEFPMEEIAREEEEEEEEEEEEEEEEDD
DDEDTSDESEEEDEEEVEEIVRPPPRPPQQQNNQMETVGLQLLQPRLYESPIFLEPTLVR
PSRNGAIFVALSDPEVLDCPTCCETLTIPVFQCENGHVACSSCSKKLQHKCPSCAMPIGD
NRCRAIEKVLESLKVRCSNWRYGCRENICFSKKYEHDKCCSHALCTCPLLGCNFQGSSKQ
LYLHCRRKHLGKLTSFQFNTSFPLFITVNDKFCILQEDKEGVLFILNNRSDTLGHVITVS
CMGLSSSKPGYFYELMTRAEGSNIRFQSSTRNVRTRVDDPPSLGCLLVPNDFLGTYGQIT
LDVCIWRLGSYPAISSVRA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaattcatacttgaagatggagaaggttcaagctatccaaggccgaaaagacaa
agaccctcttctccctcctctcctcctcctcctcctcctgaatttcctatggaagaaatt
gctcgtgaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagatgat
gatgatgaagacacaagtgatgaaagtgaagaagaagatgaggaggaggtggaagaaata
gtgagaccaccaccacgaccaccacaacaacaaaataatcagatggaaactgtgggacta
caactactacaacccagattatatgagagtccaatctttctagaacctacccttgtgagg
cccagcagaaatggagctatttttgtagctttatcagacccagaagttcttgattgtccc
acctgctgtgaaaccttgaccattcctgtttttcagtgtgagaatggacatgtagcttgt
tcttcatgcagcaaaaaactccaacataagtgtccttcttgtgctatgcccattggtgat
aaccgttgtcgtgccattgagaaggttcttgaatcgctgaaagtacgatgctccaattgg
aggtatggatgcagagaaaacatttgtttcagtaagaaatacgaacatgacaagtgttgt
agccatgcgctgtgcacatgccccctgttgggttgcaacttccagggctcatctaagcaa
ttgtacctacactgtagacgtaaacatttaggcaagttgacaagtttccaattcaatacc
agcttccctcttttcattactgtcaatgacaaattctgtattcttcaagaagataaagaa
ggtgttttattcattctgaataatagatcggatactcttggacatgtgatcactgttagt
tgtatggggctttcttcatcaaagccagggtacttttacgaacttatgacaagagcagag
ggaagcaatatcagattccaatcttccacaagaaatgtccgaaccagagttgatgaccct
ccatcgctggggtgccttctagtaccaaatgatttccttggtacttatgggcagataacc
ttggacgtctgcatctggcgtcttggctcatatcctgccattagctctgtaagagcatga
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