Populus trichocarpa (black cottonwood): 7494729
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Entry
7494729 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7494729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7494729
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7494729
Spliceosome [BR:
pop03041
]
Complex A
U2 snRNP components
U2 related factors
7494729
Complex B
7494729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
7494729
NCBI-ProteinID:
XP_024457957
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All DBs
Position
5:24795189..24800186
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AA seq
1164 aa
AA seq
DB search
MEDVKPKSRKNDYLARKEEKEDSKRIHRDRDKQRNGERHRDREKRERENSRCSERDKSSD
SDDKEREKEKHRVRGRDDRATRSRVDDRERVKDRKRDRDREERDRERDIAKEEKKERERE
KEKEREKEREKEKEKERVREKDRERESGKREREREKDRERERRERDREEREREKGREKRE
RRTREREKHRELSSDSDDDSGEHDSKLRRRDNDDSKERVHEQSISRSNRHMDNSEESLRK
KSGKEDGDKNESKTREDELEEEQKKLDEEMEKRRRRVQEWQELRRKKEETESEKGGEEAN
VDESKSGKTWTLEGESDDEEAPPTGKSDMDIDQEENAIPDKEAGDAMVVDTENDISAPQS
EVDAVNGDEEIDPLDAFMNSMVLPEVEMLNNAVVTQTADDNKADSKKKDKNDEGINGGQR
KKGSHKSLGRIIPGEDSDSDHGDLENSEVPLEDEDDDEFMKRVKKTKAEKLSIVDHSKID
YSPFRKNFYIEVKEILRMTPEEVTAYRKLLELKIHGKDVPKPIKTWHQTGLTSKILETIK
KLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPIG
LIMAPTRELVQQIHSDIRKFTKALGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID
ILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDHQTVLFSATFPRQVE
TLARKVLNKPVEIQVGGRSVVNKDINQLVEVRPEGERWFRLLELLGVWSEKGKILVFVQS
QDKCDALFRDLLKFGHPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKDL
ELVINYDVPNHYEDYVHRVGRTGRAGRKGCAITFFSEDDARYAPDLVKALELSEQVVPQD
LKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAKKAQAREYGFEEEKSDSE
DEDEVVRKAGGDISQQTALAQQIAALAAVSKIPAPVAPTPHSVTQFLSNGGLPVPLNQGP
AVASVTGLPFAHSNEAAARAAAMAAAMNLQHNLARIQADAMPEHYEAELEINDFPQNARW
KVTHKETLGPISDWTGAAITTRGQFFPPGKVPGPGDRKLYLFIEGPTEQSVKRAKADLKH
VLEDITNQTYQLPGGAQPGKYSVV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtgaaacctaaatctagaaaaaatgattatttggcacggaaggaggagaaa
gaggattctaagaggattcatcgagatagagacaagcagaggaatggagagaggcacaga
gacagagagaagagagaacgcgaaaacagtaggtgttccgagagagacaagagtagcgat
tctgatgacaaggaaagggagaaagagaagcacagagtcagaggtagggatgatagggca
acaaggagtagggttgatgatagagagagagttaaggacaggaagagagatagagacaga
gaagagagagacagggagagggacatagcgaaagaggagaagaaggagagggagagggag
aaggagaaggagagggagaaggagagggagaaggagaaggagaaggagagggttagggag
aaagatagagaaagagaaagtgggaagagggaacgtgagagggagaaagacagagaaagg
gagaggagggagcgtgacagagaagagcgagaaagggagaagggcagggagaagagggag
aggaggaccagggaaagggagaagcatagggaattgagtagtgacagtgatgatgactca
ggggagcatgatagtaaactgcgaaggagagacaatgacgactccaaggagagagtgcat
gagcagagcattagcaggtcaaacaggcacatggataacagtgaagagagcctaaggaaa
aagagtggcaaggaggacggtgataagaacgagagtaaaacccgagaagatgaattagag
gaggagcagaagaaattggatgaggagatggagaagaggaggagaagagtccaggaatgg
caagagctgagaaggaagaaggaagaaactgagagtgaaaagggtggggaagaagccaat
gttgatgaatctaagagtggtaaaacctggactcttgaaggagaatctgacgacgaagaa
gcacctcccactggcaaatccgatatggacattgaccaggaggaaaatgcaatacctgat
aaagaagctggagatgcaatggtggtggacactgagaatgacatttctgctccacaaagt
gaggttgatgctgttaatggggatgaggaaattgatccattggatgctttcatgaattct
atggtcttacctgaggttgagatgctaaacaatgctgtggttactcagactgctgatgat
aataaagcagactcaaagaagaaagataagaatgatgaaggaataaatggaggacagcgg
aagaaaggctctcataaatctctagggagaattattcctggagaagattctgattcagac
cacggggaccttgaaaatagtgaagttcctttagaagatgaggatgatgacgagttcatg
aagagggtgaagaaaacaaaagctgagaaactgtccattgttgaccactcaaagattgat
tacagtcctttccgcaagaatttctatattgaagtgaaggagatcttgaggatgactcct
gaggaggttactgcttataggaaactactggagttgaaaatacatggaaaggatgtgccg
aaaccaattaaaacttggcaccagacaggactcacaagtaaaattttggagacaataaag
aaacttaattatgagaaaccgatgacaattcaagctcaggcactgcctataattatgagt
ggacgggactgcataggcattgcgaaaactggttctggtaaaacccttgcatttgtgctg
ccaatgctgaggcatatcaaggaccagcctcctgtagaagctggagaaggaccgattggg
cttataatggcgcccacaagggagcttgtgcagcagatccacagtgatattaggaagttt
actaaggccctgggtataagatgtgtgcccgtttatggaggttctggtgtagcccagcaa
attagtgaattgaaacgggggacagagatagttgtctgtactccaggcaggatgattgac
atactttgcaccagtggagggaaaatcaccaatcttcgtagagttacatatctggttatg
gatgaagccgaccggatgtttgacatgggattcgaacctcaaatcactagaattgtccaa
aatattcgtccagatcatcaaactgtactcttttctgccactttccctcggcaggttgaa
actttggctcgtaaagtactgaacaaacctgtggaaatacaggtaggtgggaggagtgtg
gtgaataaggacatcaatcagctggttgaggtaagaccagaaggtgaaaggtggtttagg
ttgttagaactacttggtgtatggagcgagaagggaaaaattttggtatttgtccaatca
caggacaaatgtgatgcgttgtttagggacttgctgaagtttggtcatccttgcctctca
cttcatggggctaaggatcagacggaccgtgaatccaccatttcggattttaagagcaac
gtctgcaatttgttgattgcaacaagtgttgcagccagaggcttagatgtgaaggatcta
gaactggtgatcaattatgatgttccaaatcattatgaggattatgttcaccgtgttggt
cggactggccgagctggtcgcaaaggctgtgccatcacttttttctccgaggatgatgca
agatatgcaccggatcttgtaaaagcattagaactctctgagcaagttgttccacaagac
ttgaaagcccttgctgatggttttatggtgaaagtgaatcagggtctggagcaagcccat
ggaactggttatggtggaagtggttttaaattcaatgaggaagaggatgaaaagagaatg
gcggcaaagaaagcacaagcaagagaatatggcttcgaggaagagaagtctgattcagaa
gatgaagatgaagttgttcggaaggcaggtggtgacatctcacagcagactgcccttgct
cagcagatagctgctcttgctgctgtctcaaaaatccctgcacccgtggcaccaactcct
cactctgttactcaatttctttctaatggtggattacctgttcctctcaatcaaggtcca
gcagttgcatctgtgactgggctgccttttgctcatagtaatgaagctgcagccagggca
gcagcaatggcagccgccatgaatttgcaacacaacctggcaaggatccaagctgatgca
atgcctgaacattatgaagcagagctggaaatcaatgattttccccaaaatgctcggtgg
aaggttacccacaaggaaactttgggcccaatttcagattggactggtgctgccattacc
accagggggcagtttttcccaccaggcaaggtgccaggaccaggagatcgcaagctgtac
ctgttcatcgagggccctactgagcagtctgttaagagagctaaagctgatctaaaacat
gttttggaagacatcacgaaccaaacatatcaacttcctggtggagctcaaccaggcaaa
tactcggttgtataa
DBGET
integrated database retrieval system