Populus trichocarpa (black cottonwood): 7495316
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Entry
7495316 CDS
T01077
Name
(RefSeq) protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5
KO
K12199
vacuolar protein sorting-associated protein VTA1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
7495316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7495316
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
7495316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vta1
Vta1_C
Motif
Other DBs
NCBI-GeneID:
7495316
NCBI-ProteinID:
XP_006377238
UniProt:
U5FVC3
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Position
11:8922190..8927145
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AA seq
436 aa
AA seq
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MGSENEPAKLLLPYLQRADELQKHETLVAYYCRLYAMEKGLRIPQNERTKTTNSLLISLM
NQLEKDKKSLNLGPEDNLYLEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEIITQ
FGALQPDLEQKQKYAVWKAADIRKALKEGRKPNPGPPADDENLSIPSSTPSGGYDLGPSE
SAASNARPESAASNARPESDPSPQFHDQLNDEPYTNIPPSPLFHDKVNNHHSAHVPPPSL
FYDSASNQHSTDTPPPSFYPAAGYPSQDFHPPPPASRSENSAYAQPYHHQSNSQEPQPHL
PQNYQSHEPSSYSYPNFQSYPSFSESSLPSVPSHHPSYYQGSDSSHTPQPAPPTSSYSST
PQYASSSIMRTTSDPASTSAKTYQYDINYQPPPEKIVEAHKAARFAVGALAFDDVSVAVD
YLRKSLELLTNPSVGQ
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgagaacgagccagcgaaactactgttaccgtacctgcaaagagccgatgag
ctacagaaacatgaaactctcgtcgcttattactgtcgattatatgcgatggagaaagga
ttgaggattccacaaaatgaacggactaagactactaattctctccttatttctctcatg
aatcagctcgaaaaggataagaaatcattgaatttgggacctgaagacaatctgtatctt
gaaggatttgccttgaatgtgtttgggaaggcagacaaacaagatcgtgctggacgagct
gatttgaatactgcaaaaacattttatgcagcaagcatattctttgagatcataactcaa
tttggtgcacttcagcctgatcttgagcagaaacagaagtatgcagtttggaaagctgca
gacataaggaaagctctgaaagaaggaaggaagcccaacccaggcccacctgctgatgat
gaaaatctatcaattccatcaagcacacctagtggtggatatgatcttggaccaagtgaa
tctgcagctagcaatgctcgtccagaatctgcagctagcaatgctcgtccagaatctgat
ccatcacctcagttccacgatcaacttaatgatgagccctatacaaacattccaccatcc
cctctgttccatgataaggtaaacaaccaccattctgcacacgttccaccaccatctctg
ttctatgactcagctagcaaccaacattcgacagacacccctccaccttctttttaccct
gctgctggctatccttcacaggattttcatccacctcctccagcaagcagatcagagaat
tctgcatatgctcaaccataccaccatcaatccaactcgcaagaacctcaaccacatttg
ccacaaaattaccaatctcatgaaccttcctcatactcttatcccaacttccagtcttat
ccaagtttctcagagagtagtctcccatcagtaccatcacatcacccatcatactatcag
ggttctgattcttcgcacaccccccagccggcccctcccacaagcagctattcatcaact
ccacagtacgcttcaagcagcataatgaggaccacctcggatcctgcatcaacttctgct
aagacataccaatatgacatcaattaccaaccacctcctgagaaaattgtagaggcacac
aaagctgcaagatttgcagttggagccttggcatttgatgacgtgtcagttgctgtggac
tacttgaggaaatcacttgaattgctgacaaatccatcagttgggcagtga
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