Populus trichocarpa (black cottonwood): 7496110
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Entry
7496110 CDS
T01077
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7496110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7496110
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
7496110
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Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
PRP4
eIF2A
PROPPIN
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
7496110
NCBI-ProteinID:
XP_002308919
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Position
6:complement(3101541..3105905)
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AA seq
574 aa
AA seq
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MAAEEENPALSNLPEESSAVVPDDELMIDNSSPIQPTPPIIPPVIPSSIPVLPSIAPIPI
VPPRPLAPLPIRPPATRPPGVQNGEMRTSDSDSDQEELSPTGTTPGSTGGYEISEASRLV
RERQQKAMQEFMMKKRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMLMAK
LDSEGQLEKLMKVHEEEEAASTAAAEDAEEEFVQYPFYTEGSKELLDARIDIAKYSISKA
ALRLQRARRKRDDPDEDEDAEIDWSLNQAESLSLNCSELGDDRPLSGCSFSCDGEMLATC
SLSGVAKIWSVPQVTKVSNLKGHMERATDVAFSPVHNHLATASADRTARLWNTDGSLLMK
FEGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDIDSGVELLLQEGHSRSIYGIAFHHDGS
LAASCGLDALARVWDLRTGRSIMAFEGHVKPLLGISFSPNGYHLATGGEDNTCRIWDLRK
KKSLYVIPAHSNLVSQVKFEPQEGYYLVTSSYDMTAKVWSGRDFKHVKTLSAHEAKVTSL
DISADGRLIATVSHDRTIKLWSSRSNEKDAMEVE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgaagaggaaaatcccgctttgtcaaatttaccagaagaatcttctgctgta
gtccctgatgatgaactgatgattgataactctagtcctattcaaccaactccaccaatc
attccgccggtaatcccatcttcaataccagttttgccttctatcgctccaatacctata
gttcctccccgcccattagcaccgctccccatccgaccgcctgcaactaggccacctggg
gtgcaaaatggtgagatgagaactagtgactcagattctgaccaagaggaattaagtccc
actgggactaccccggggtcaactgggggttatgaaatttcggaagccagcagactagta
agagaacggcagcaaaaggcaatgcaggagtttatgatgaagaagcgtgctgctgctttg
gcagtgcctactaatgatatggcagttaggactcgtcttcgccggcttggtgagcctata
actcttttcggagaacgagagatggagagacgggacaggttgaggatgcttatggctaag
ttggattctgaaggacaattggagaagttgatgaaagttcatgaggaagaggaggctgca
tctactgcggcagcagaagatgccgaggaagaatttgttcagtatccattctacactgaa
gggtcgaaagagctcttggatgctagaattgatattgctaaatactccatttcgaaggca
gctttgcgtcttcaacgtgcaaggagaaaaagagatgacccagatgaagatgaagatgca
gagattgattggagtctgaatcaggcggagagtttgagtcttaattgcagcgagcttgga
gatgaccggccactctctggctgttccttctcttgtgacggagaaatgctcgctacctgt
tccttaagtggagttgctaaaatatggagtgtgcctcaagttacaaaggtttctaactta
aagggacacatggaacgtgcaactgatgttgccttctctcctgtgcacaatcatttggca
actgcctccgctgatcgaactgcaaggttgtggaacactgatggttctctcctgatgaag
tttgaaggtcatctagaccgtcttgctcgtgttgctttccatccatcagggaagtacttg
ggcaccacgagctttgataagacatggagactgtgggatatagattctggtgtggagctg
ctccttcaagaaggtcacagtcggagcatttatggaatagctttccatcatgatggatca
ttagcagcatcctgtggattggatgcactagcacgtgtttgggacctacgtactgggaga
agtataatggcattcgaaggccatgtcaagccgcttcttgggatcagcttttcacccaat
ggctatcatttagcgactggcggagaggataatacttgccggatatgggatttaaggaag
aaaaaatcattgtatgtcataccagcacactcaaatctcgtatcacaagtaaagtttgag
ccccaagaaggatactatctggttacatcatcatatgacatgactgctaaggtttggtct
ggccgagattttaagcatgtcaagacattatcagctcacgaagccaaagttacatctctg
gatattagtgcagatggacgtctaattgcgactgtctcacatgaccgaaccatcaagctg
tggtccagcagaagcaatgaaaaggatgctatggaggttgaatga
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