Populus trichocarpa (black cottonwood): 7496488
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Entry
7496488 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7496488 isoform X4
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7496488
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
7496488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
7496488
NCBI-ProteinID:
XP_002315473
LinkDB
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Position
10:complement(310221..322262)
Genome browser
AA seq
690 aa
AA seq
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MELDDDDWGLSAEEFDSLERDALLKIASQQQQQQQQQQQQQPSASSSFNQQQNQQLHFSN
KPIFNSPSKKVDPLPDGLPKSSPVSKPKPVESSKALPKLSVKFILHATGNIAAKFLYDPV
LVGALRKVPKANWNAKERLWIFPVSSLLSAEKVLSEISGFNVEVEKLDTLVQRAIAAASV
APDLRDWYDRIPDHIESKLMPFQRDGVRFVLQHGGRALLADEMGLGKTLQAIAVAACVRN
SWPVLILAPSSLRLHWASTIHQWLDIPSSDILVVLSQSSGSNRAGFNIVSSSRSTIRLDG
LFNIISYDAVPKLQNKLMTSEFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGT
PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGVYQGASNHEELHNLIKATVMIR
RLKKDVLSELPVKRRQQVFLDLPEKDMKQINTLFRELEVVKGKIKACASDEEVESLKFTE
KNLINKIYTDSAEAKISGVLDYLGTVIEAGCKFLIFAHHQSMIDSIHEFLLKKKVGCIRI
DGKTAAASRQALVTDFQEKDAIKAAVLSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAE
DRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGQEKTLEVSASQQRSSP
AKQRTLDTYMKRCSNLDDSEHQPKLKYPRH
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggaattggatgacgacgactggggtttaagcgctgaagaatttgattcccttgaaaga
gacgctctcctgaagatagcatctcaacaacaacaacagcaacaacagcaacagcaacag
caaccttctgcttcttcttcttttaatcaacaacaaaaccagcaattacattttagcaac
aaacccatctttaattctccttcaaaaaaggttgatcctttgcctgatggcttgcccaaa
tcatcgccggtatcaaaaccaaaacctgttgaaagttccaaggcattaccaaagctctct
gtcaagtttattcttcatgctactggaaacattgccgctaaatttttatacgaccctgta
ctagtaggggctctccgcaaggtccccaaagccaattggaatgcaaaagaaaggttgtgg
attttcccagtatcttctttgttgtcagcagaaaaagttcttagtgaaatatctggcttt
aatgttgaggtagaaaagttagacaccttggtgcaacgtgctattgctgctgcttctgtt
gctccagatcttcgagactggtatgacaggataccagaccatattgaatcaaagcttatg
ccttttcagcgggatggtgttaggtttgttttacaacatggtgggcgcgcactcctagca
gatgaaatgggactgggaaagactttacaggctattgctgtagcagcatgtgttcgtaat
tcctggcctgttctaatacttgcaccctcttccttgcgtttgcattgggcttcaacgatt
caccaatggcttgatattccttcatcagatatacttgttgttttatcgcaatcgagtgga
tctaacagagctggattcaatattgtatcaagttctaggagcactattcgccttgatggc
ttatttaacatcatctcttatgatgcagtccctaagttgcagaacaaattaatgacatca
gagtttaaggttgtgattgcagacgagtcacacttcctgaaaaatgctcaagcaaagagg
acaactgcctcgcttccagttataaagaaagctcaatatgcaatattgctcagtggaacc
cctgctttatccagacccatagagctttttaagcagttggaagccttgtatcctgatgta
tacaagaatgttcatgaatatggtaaccggtattgcaaggggggaatatttggagtttat
caaggtgcaagtaaccatgaagaattgcacaacttaatcaaggcaacagtgatgatacgc
aggcttaaaaaggatgtcctttctgagcttcctgtgaaacgacgacaacaggtattcctt
gatttgcctgaaaaggacatgaaacaaatcaatactttattccgtgagttggaggtggta
aaaggaaaaattaaggcttgtgcatcagatgaagaggttgaatcactgaaattcacagag
aagaatcttattaacaagatatatactgattctgctgaagccaagatatctggagttcta
gattatctgggaactgtcattgaggcaggatgcaagtttctgatttttgctcaccatcaa
tccatgattgattcaatacatgagtttcttcttaaaaaaaaagtgggctgcatccgaatt
gatggcaaaaccgctgcagcttcaaggcaagcattggtaactgattttcaggaaaaggat
gctatcaaggcagcagtgctatctattagagctggaggtgttgggttaactttaacagct
gcaagcactgttatttttgcggaattgtcttggacaccaggtgacctaattcaagcggaa
gaccgtgctcacaggattggtcaggtttcttcagtcaatatatactacctgctagcaaat
gacacagttgatgacatcatttgggatgttgttcaaagcaaattggaaaatttgggacag
atgctcgatgggcaagagaaaaccttggaagtttcagccagccagcagagaagcagccct
gcgaagcagagaacactagacacttacatgaagcgatgtagcaatttggatgactctgaa
catcagcctaagctcaaataccccaggcactga
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