KEGG   Pseudomonas oryziphila: EJA05_20250
Entry
EJA05_20250       CDS       T07791                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
pory  Pseudomonas oryziphila
Pathway
pory00010  Glycolysis / Gluconeogenesis
pory00020  Citrate cycle (TCA cycle)
pory00260  Glycine, serine and threonine metabolism
pory00280  Valine, leucine and isoleucine degradation
pory00310  Lysine degradation
pory00380  Tryptophan metabolism
pory00620  Pyruvate metabolism
pory00630  Glyoxylate and dicarboxylate metabolism
pory00640  Propanoate metabolism
pory00785  Lipoic acid metabolism
pory01100  Metabolic pathways
pory01110  Biosynthesis of secondary metabolites
pory01120  Microbial metabolism in diverse environments
pory01200  Carbon metabolism
pory01210  2-Oxocarboxylic acid metabolism
pory01240  Biosynthesis of cofactors
Module
pory_M00009  Citrate cycle (TCA cycle, Krebs cycle)
pory_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
pory_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
pory_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
pory_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:pory00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    EJA05_20250 (lpdA)
   00020 Citrate cycle (TCA cycle)
    EJA05_20250 (lpdA)
   00620 Pyruvate metabolism
    EJA05_20250 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    EJA05_20250 (lpdA)
   00640 Propanoate metabolism
    EJA05_20250 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    EJA05_20250 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    EJA05_20250 (lpdA)
   00310 Lysine degradation
    EJA05_20250 (lpdA)
   00380 Tryptophan metabolism
    EJA05_20250 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    EJA05_20250 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pory04147]
    EJA05_20250 (lpdA)
Enzymes [BR:pory01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     EJA05_20250 (lpdA)
Exosome [BR:pory04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   EJA05_20250 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 GIDA FAD_oxidored HI0933_like NAD_binding_8 FAD_binding_2 DAO FAD_binding_3 AlaDh_PNT_C UDPG_MGDP_dh_N MCM_bind
Other DBs
NCBI-ProteinID: AZL69910
UniProt: A0A3Q8U2R1
LinkDB
Position
4332873..4334252
AA seq 459 aa
MQPIIDTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAE
QFHQTSRYTEPSALGISVSSPRLDISRSVEWKDGIVDRLTSGVAALLKKHGVKVIHGWAK
ILDGKSVEVDGQRIQCEHLLLATGSNSVELPMLPIGGPIISSTEALAPKALPQHLVVVGG
GYIGLELGIAYRKLGAKVSVVEARERILPTYDAELTAPVADSLKKLGIALHLGHSVEGYS
DGCLLARDGQGAQLRLEADQVLVAVGRRPRTQGFGLESLDLKMNGAAIAIDERCQTSMRN
VWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPSAIAAVCFTDPEVVVAGTTPEQA
SQQGVDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLIIGWQAVGVAVSELSTAFAQ
SLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALHI
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgcaaccgatcatcgacaccaccctgctgatcatcggtggcggccctggcggctatgtg
gccgccatccgcgccgggcaactgggcatccccaccgtgctggtcgaaggccaggcgctg
ggcggcacctgcctgaacatcggctgcatcccgtccaaggcgctgatccatgtggccgag
cagttccaccagaccagccgctacaccgaaccgtcggcactgggcatcagcgtatcttcg
ccacgcctggacatcagccgcagcgtcgagtggaaggacggcatcgtcgaccgccttacc
agcggcgtcgccgccctgctgaaaaaacacggcgtgaaagtgatccacggctgggcaaag
atcctcgatggcaagagcgtcgaagtggacggccaacgcatccagtgcgaacacctgttg
ctggccaccggctcgaacagcgtggaactgccgatgctgccgatcggcgggccgatcatc
tcgtccaccgaagcccttgcgcccaaggccctgccgcagcacctggtggtggtcggcggc
ggctatatcggcctggagctgggcatcgcctaccgcaagctgggcgccaaggtcagcgtg
gtggaagcccgtgaacgcatcctgcccacctacgacgccgagctcaccgcaccggtggcc
gattcgctcaagaagctgggcatcgcgcttcacctgggccacagcgtcgaaggctattcc
gacggctgcctgctggcgcgcgatggccagggcgcacaactgcgcctggaggccgatcag
gtattggtggccgtgggtcgtcgcccgcgtacccagggctttggcctggaaagcctggac
ctgaagatgaacggtgcggccatcgccatcgacgagcgctgccagaccagcatgcgcaac
gtctgggccatcggcgacgtggccggcgagccgatgctggcgcaccgggccatggcccag
ggcgagatggtggcggaaatcatcgccggcaaggcgcgacgcttcgagcccagcgcaatc
gccgccgtgtgtttcaccgacccggaagtggtggtggccggcactacgccggaacaagcc
agccaacagggcgtggactgcatcgttgcgcaattcccgtttgccgccaacggccgggcc
atgagcctggagtcgaagagcggcttcgtgcgggtggtggcgcgccgcgacaatcacctg
atcatcggctggcaagcagtgggggtggcggtgtccgagctgtccaccgcctttgcccag
tcactggagatgggcgctcgcctggaagatatcgccggcaccatccacgcccacccgaca
ctgggtgaagccgtgcaggaagcggcgctgcgcgcccttggccacgcactgcacatctag

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