Polaromonas sp. SP1: DT070_09365 Help Entry DT070_09365       CDS       T05689                                  Symbol uvrA Name (GenBank) excinuclease ABC subunit A   KO K03701   excinuclease ABC subunit A Organism pos  Polaromonas sp. SP1 Pathway pos03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:pos00001]  09120 Genetic Information Processing   09124 Replication and repair    03420 Nucleotide excision repair     DT070_09365 (uvrA)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pos03400]     DT070_09365 (uvrA) DNA repair and recombination proteins [BR:pos03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      DT070_09365 (uvrA)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      Supressor       DT070_09365 (uvrA) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ABC_tran UvrA_inter AAA_21 SMC_N AAA_29 AAA_16 nSTAND1 RsgA_GTPase AAA_22 AAA_23 AAA_18 NACHT AAA_25 Viral_helicase1 DUF4350 AAA_33 UvrA_DNA-bind DnaJ_CXXCXGXG nSTAND3 BCA_ABC_TP_C Anti-TRAP RNA12 Motif Other DBs NCBI-ProteinID:  AYQ28200 LinkDB All DBs Position 1980932..1986805 Genome browser AA seq 1957 aa AA seqDB search MSQGTIRIRGARQHNLKNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLFAEGQRRYVETFS AYARQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAQL FDRQTAQSVRHDTPESIYAELMARTKEGDPRVVLTFPVELPGNTSPEQVEQWLSVSGFTR VHAQRDVATPAGPHKLLDVVADRFRAHAVEKSRVLEAIETALKRGGRLNIYVQHAEDGQP DVMWRFSTGLHCPDSDLRYTNPTPSLFSFNSAMGACETCRGFGRVIGVDYGLVIPNDKLT LRAGAIKTIQTPAWKEAQDDLMRHAEAAGIPRDTPWYKLTPEQQGWVINGTPGYKDGNWN KQWYGIKRFFEYLESKAYKMHIRVLLSKYRSYTPCETCGGARLKLESLLWRLGSKEAADA VLPASQRFMPVGVQWSREQLEALPGLALHDLMRLPIDRLRQFFSGLSLDVMGDDAELQAL RSLFEEIQTRVKYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPS IGLHPRDMNRITQAMHRLRDAGNTLVVVEHDPAVMLAADRLIDMGPGPGEKGGQIVFDGT PDDIKHADTLTGAYLGSRKQVGMGFKRAVTENTPRLILEGARDHNLKNLTVDFPLQRLVC VTGVSGSGKSTLMQDILAPALLRQFGKATETPGLHDRLMGADHLTDVVFVDQSPIGKTAR SNPASYVGAWDAVRDLFALAPLAKQRSYTATKFSFNNGDGRCPTCGGSGFEHVEMQFLSD VYLRCPDCDGKRYRAEILEVTIERKAIGDAKPRLLNVSDVLDLTVSEAVALFAQDREVVR ALQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLANASKTTSASKQALALRQPGRGTL FLFDEPTTGLHFDDIAKLMRALRKLLEAGHSLIVIEHNLDVIRSSDWLIDLGPEGGEGGG LLVAQGTPEEVRQHPTSHTALALREYEQAMGKVHGVEESRPKTWTTRPAFSNLIQIVNAK ENNLKSLSVDIPRGKFNVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQPAGR PEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCTKDGAAVMPQ SPESIAAQLIKTYRGQHIGLLAPLVIARKGVYTELADWARPRGYTHLRIDGEFLPTTGFP RIDRFKEHTVELPIADINVSPDNEAALRAALTTALEHGKGVVHVLAPLDGLRGAMMAGAS AKGIGKLIAFSTKRACPICATSYAELDPRLFSYNSKHGWCPDCVGTGVKLTKEQRKVFDD SVMDDDNKGREQSFAEPEVEDVAGTACPTCEGTRLNAKARAVKFAGVGIADIAALSVTDV RRWVEKLALLGREAGIARDLIPEIKSRLEFLEDVGLGYLTLDRGAPTLSGGEAQRIRLAA QLGSNLQGVCYVLDEPTIGLHPRDNQILLSALGKLSDRGNTLVVVEHDEDTIRRADNIID IGPGAGKRGGTLVAQGTAAQLSAVPESLTGRYLANPLIHPLQVRRETRKGVAPVAAVKEA PVDVNAKPVSKQKAATLKAAALKAAAASASALHNAAPAEAGPFTSWLTVVNADLHNLKDV SVTVPLYRLVAVTGVSGSGKSTLARDVLLTNVHAGVMQRSTKSGRDADDKGNTPDWTGCE RIEGYAAVDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEARARGYGAGRFSFN TGEGRCPTCEGAGVRTIGMSFLPDVKVLCETCHGARFNPETQAVTWRGKNIGDVLKMEVD EAVDFFSSMPNISHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRR GQKAPHTLYVLDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDVIAEADWVIDLG PDGGNAGGRVVASAPPEAVVKLGTHTGKALQSVLARV NT seq 5874 nt NT seq  +upstreamnt  +downstreamnt atgtcccagggaaccatccgcatccgcggagctcgccagcacaacctcaaaaacctcgac ctggatatccgcaccggtgaaatgacggttgttacaggccccagcggctccggaaagtct tccctggtgttcgacacgctgttcgccgaaggccagcgccgctatgtcgagaccttctcg gcctatgcgcggcagttcctggatcgcatggacaagccggccgtcgacaaggtggaaggc gtgccgcccgccatcgccatcgaccagaccaacccggtgcgcagctcgcgctccaccgtg ggcaccatgacggagctcaacgaccacctgaagctgctctacgcgcgcgccgcgcagctc ttcgacaggcagaccgcacaaagcgtgcggcacgacacgcccgaatcgatttacgccgaa ctgatggcgcgcaccaaagaaggcgacccgcgtgtggtgctgactttcccggtcgagctg ccgggcaacaccagccccgagcaggttgagcagtggctgtccgtcagcggcttcacgcgt gtgcatgcacagcgcgatgtcgccacgccggcaggcccgcacaagctgctcgatgtggtg gcagaccgctttcgcgcccatgcggtggaaaagtcccgtgtgctggaggcgattgaaacc gcgcttaaacgtggcgggcgtctcaatatttacgtgcaacacgccgaagacggtcagcct gatgtcatgtggcgtttctccacaggcctgcattgccccgacagcgacctgcgctacacc aaccccacgccctcgctgttctccttcaactcggcgatgggcgcctgcgagacctgccgc ggcttcggccgcgtcatcggcgtcgactacggcctggtgatccccaacgacaaactcacc ctgcgcgccggcgccatcaagacgatccagacccccgcctggaaagaagcgcaggacgac ctgatgcgccacgccgaagcggccggtatcccgcgcgacacgccctggtacaaactcacg cccgagcagcagggctgggtcatcaacggcacgccgggctacaaggacggcaactggaac aagcagtggtacggcatcaagcgcttcttcgaatacctcgagagcaaggcctacaagatg cacatccgtgtgctgctgtccaagtaccgcagctacaccccctgcgagacctgcggcggc gcacgcctgaagctcgagtcgctgctctggcgcctgggctccaaagaggccgccgacgcg gtgctgccggccagccagcgctttatgccggtcggcgtgcagtggagccgcgagcagctc gaggccttgccgggcctggcgctgcatgacctgatgcgcctgcccatcgacaggctgcgg caattcttcagcggcctctcgctcgacgtgatgggtgacgacgccgaactgcaggcgctg agatccctgttcgaggaaatccagacgcgcgtgaagtacctctgcgatgtcggtatcggc tatctcacgctcgaccggcaaagccgcacgctctcgggcggtgaagtacaacgcatcaac ctcaccaccgcactgggcacctcgctggtcaacacgctgtttgtgctggatgagccttcc atcggcctgcacccgcgcgacatgaaccgcatcacccaggccatgcaccgcctgcgcgac gccggaaacacgctggtggtggtcgagcacgacccggccgtcatgctggcggccgaccgc ctgatcgacatgggcccgggccccggcgagaagggcgggcagatcgtattcgacggcacg cctgacgacatcaagcatgccgacaccctgaccggcgcctacctcggctcacgcaagcag gtgggcatgggcttcaagcgcgcggtgaccgagaacacgccgcgcctcatcctcgaaggt gcacgcgaccacaacctgaaaaacctgacggtcgacttcccgctgcagcgcctggtctgc gtcaccggcgtcagtggctcgggcaagtccacgctgatgcaggacatcctggcgccggca ctgctgcgccagttcggcaaggcgaccgaaacgccggggctgcatgaccgcctcatgggc gccgaccacctgaccgatgtggtgtttgttgaccagtcgcccatcggcaagacggcgcgc tccaaccccgccagctatgtgggcgcgtgggacgcggtgcgcgatctcttcgccctggcg ccgctggccaaacagcgcagttacaccgccaccaagttcagcttcaacaacggcgacggg cgctgcccgacctgcggcggatcgggcttcgagcacgtcgagatgcagtttttgagcgac gtctacctgcgctgccccgactgcgacggcaagcgttaccgcgccgagatacttgaagtg acgattgagcgcaaggcgatcggcgacgcgaagccgcgcctgctcaatgtgtccgacgtg ctggaccttacggtgagtgaagcggttgccctttttgcgcaagaccgcgaagtggtgcgt gcgctgcagcccatcgtggatgtgggcctggaatacgtgaagctgggccagcccgtgccc acgctctccggcggtgaggcgcagcgcctgaagctcgcgggtttcctggccaatgccagc aaaaccaccagcgccagcaaacaggcgctggcgctccggcaaccgggccgcggcacgctg tttttgttcgacgagccgaccaccggcctgcactttgacgatatcgccaagctgatgcgc gcgctgcgcaagctgcttgaagccggccattcgctgatcgtcatcgagcacaacctcgac gtgatccgctcgtccgattggctgatcgacctgggccccgaaggcggcgaaggcggcggc ctgctggtggcgcagggcacgcctgaagaggtgcgccagcacccgacatcgcacaccgca ctggccctgcgcgagtacgagcaggccatgggcaaggtgcatggtgttgaagagtcgcgc cccaaaacctggaccacacgcccggctttttccaacctgatccagatcgtcaacgccaaa gagaacaacctcaagagtttgtcggtcgacattccgcgcggcaagttcaatgtggtgacc ggcgtgtccggctccggcaagtcgacgctggcctttgacatcctgttcaacgaagggcag cggcgttacctggagtccctcaacgcctacgcgcgcagcatcgtgcaaccggcgggccgg cccgaggtcgatgcggtctacggcatcccgcccaccgtggcgatcgagcagcgcctctcg cgcggcggccgcaagtccaccgtgggcacgaccaccgaggtctggcatttcctgcgcctg ctctacgtcaagctgggcatccagcactgcaccaaagacggcgcggccgtgatgccgcaa agccccgagagtatcgcggcccaattgatcaaaacctaccgcggccagcacatcggcctg ctggcgccgctcgtgatcgcgcgcaagggcgtctacaccgagctggccgactgggcgcgc ccgcgcggctacacgcacctgcgcatcgacggcgagtttttgccgaccactggctttccg cgcatcgaccgcttcaaggaacacacggtggagctgccgattgccgacatcaatgtgtcg cccgacaacgaagccgcgctgcgtgctgcgctcacgacggcgctggagcacggcaagggc gtcgtccacgtgctcgccccgctcgacggcctgcgcggcgcgatgatggccggcgccagc gccaaaggcatcggcaagctgatcgcgttttcgaccaagcgcgcctgcccgatctgcgcc acctcgtatgccgagctggacccgcgcctcttcagctacaacagcaagcacggctggtgc cccgactgcgtgggcaccggcgtcaagctcacgaaagagcagcgcaaggtgtttgacgac tcggtgatggacgacgacaacaagggccgcgaacaaagttttgccgagcccgaagtggaa gacgtggccggcacggcctgcccgacctgcgaagggacacgcctcaatgccaaggcccgc gcggtgaagttcgcaggcgtcggcattgccgacatcgcggcgctgtcggtgaccgacgtg cggcgctgggtcgaaaagctcgcattgctgggccgcgaggccggcatcgcacgcgacctg attcccgagatcaagagccggctcgaattcctcgaagacgtgggtctgggctacctgacg ctggaccgcggcgctcccacgctctcgggcggcgaggcgcagcgcatccgcctggccgcg cagctgggctccaacctgcagggtgtttgttatgtgctcgatgaacccacgattggcttg cacccgcgcgacaaccagattttgctgagcgccttgggcaagctcagcgaccgcggcaac acgctggtggtggttgagcatgacgaagacacgattcgccgcgccgacaacatcatcgac atcggccccggcgccggcaagcgcggcggcacgctggtggcgcagggcacggcggcgcag ctgtcggccgtgccggaatcgctgacgggtcgctacctggcgaacccgctgatccacccg ctgcaggtccgccgcgaaacacgcaagggcgtggcgccggtggcggccgtgaaggaggcg cccgttgacgtgaacgccaagccggtcagcaagcagaaggccgccacgctgaaagccgcg gcgctcaaggccgcggcagccagcgccagcgcgctgcacaatgcggcgccggcagaagca gggcctttcacgtcctggctcaccgtcgtcaatgccgacctgcacaacctgaaagacgtg tcggtcaccgtgccgctgtaccgcctggtggcggtgacgggcgtgtcgggctccggcaag tcaacgctcgcccgcgacgtgctgctgaccaacgtgcatgcgggcgtgatgcagcgctcc accaagtcgggccgcgacgccgacgacaagggcaacacgcccgactggaccggctgcgaa cgcatcgagggttatgcggcggtggaccgcgtgctcgaagtcgaccagacgccgatcggc aagacgccgcgctcctgcccggccacctacatcggcttttgggacacgatacgcaagctc tttgccgatacgctggaagcccgcgcgcgcggctacggcgccgggcgcttttcgttcaac accggcgagggccgctgcccgacctgcgaaggcgcgggcgtgcgcaccatcggcatgagc tttttgcccgacgtgaaggtgctgtgcgaaacctgccacggcgcgcgcttcaaccccgaa acgcaggccgtgacctggcgcggcaaaaacatcggcgacgtgctgaagatggaggtcgat gaggcggtggacttcttctcgtccatgcccaacatcagccacccgctgcagttgctgaaa gacgtgggcctgggctacctgacgctgggccagccgtcgcccacgctgtcgggcggcgag gcgcagcgcatcaagctggtgaccgagctcagcaaggtgcgcgacgacatcacgcgccgc ggccagaaggcgccgcacacgctctatgtgctggacgagcccacggtgggcctgcacatg gccgacgtcgaaaagctgatccacgtgctgcaccgcctcgtcaacggcggccacagcgtg gtggtgatcgagcacgacctggacgtgatcgccgaagccgactgggtgattgacctgggg ccggacggcgggaatgcgggcgggcgtgtggtggcatctgcgccgcccgaagccgtggtg aagttgggtacgcacacaggaaaagcgttgcaaagcgtgctggcacgggtatga

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