Pelagovum pacificum: I8N54_09295
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Entry
I8N54_09295 CDS
T06971
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ppaf
Pelagovum pacificum
Pathway
ppaf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I8N54_09295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppaf03400
]
I8N54_09295
Enzymes [BR:
ppaf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
I8N54_09295
DNA repair and recombination proteins [BR:
ppaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
I8N54_09295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QQA44740
LinkDB
All DBs
Position
1884893..1886332
Genome browser
AA seq
479 aa
AA seq
DB search
MHVVTLPEIGTFDAWRDTARGLLCAGVPPEDIAWHRGTTEADLFGGSGGPLPRGDGEVTV
PKGFVSLVRDVVWHRDPERFARAYTLLWRLQRNRRLLDDRGDPLVDRLQSMAKEVRRDKH
KMTAFVRFRDIGQPDAARRSFAAWFEPSHFTLEPTTPFFAKRFGDMDWIIQTPDLTATFE
DGKVRFSDGVAKPPVPEDATEELWRTYFRSIFNPARLKVKAMQAEMPKKYWKNMPEAALI
PELIAGAQARAAEMAAAAPTLAPARAGRITERFDMDHAERPPVDDRDSYLRELAGCRRCP
LWENATQAVPGEGPLDAELMIVGEQPGDQEDLAGRPFVGPAGQLFDEAAEQAGLDRRRAF
ITNAVKHFKFTPRGKRRIHQSPNSSEISHCRWWLDAERTLVQPKLILGMGGTALESLTGD
RKGILKRRGQVEHLSDGTPMFVTVHPSYILRLPDRGLRDEETARFREDLRGALDWLRAA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtcgtcacgctccccgagatcggcaccttcgacgcctggcgcgatacggcgcgg
gggctgctctgcgccggcgtgccgccggaggacatcgcctggcatcgcggcacgacagaa
gccgacctgttcggtggcagtggcggaccgctgccgcgcggggacggggaggttacggtg
cccaagggcttcgtttcgcttgtgcgggatgtcgtctggcaccgcgatccggagcggttc
gcgcgggcttacacgctcctgtggcggctgcagaggaaccggcgcctgctcgacgaccga
ggcgatccgctggtcgaccggctgcagtcgatggccaaggaagtccgccgcgacaagcac
aagatgaccgccttcgtccggttccgcgacatcggccaacctgacgccgcccggcgcagc
ttcgccgcgtggttcgagccgagccacttcacgctggaaccgaccacgcccttcttcgcc
aagcgcttcggcgacatggactggatcatccagacgcccgacctcactgccacgttcgag
gacggcaaggtgcggttctccgatggagtggcaaagcccccggtgccggaagacgcgacg
gaggagctttggcggacctacttccgcagcatcttcaaccccgcacgtctgaaggtgaag
gcgatgcaggccgagatgccgaagaagtactggaagaacatgcccgaagcggcgctgatc
cccgaactgatcgcgggcgctcaggcccgcgccgcagagatggccgccgccgcgccgaca
ctcgccccggcccgcgcgggccgcatcaccgaaaggttcgatatggatcacgccgagcgt
ccccccgtcgacgaccgcgacagctacttgcgggagctcgccggctgccgccgctgtccc
ctctgggaaaacgcgacacaggcggtgcccggggaggggccccttgatgccgagctgatg
atcgtcggcgaacagccgggcgatcaggaggatctcgccgggcgccccttcgttggccca
gccggacaattgttcgacgaagcggcggagcaggccggcctcgaccggcggcgggcgttc
atcaccaatgccgtgaagcacttcaagttcacaccgcgcggcaagcggcggattcaccag
tcacccaacagttcggagatcagccattgccgctggtggcttgatgcggagcggacgctg
gtgcagccgaagctgatcctcggcatgggcggcaccgcgctcgaaagcctgaccggggac
cggaaagggatcctgaagcggcgtgggcaggtcgaacatctgtccgatggcacgccgatg
ttcgttaccgtgcacccgtcctatatcctgcgactgcccgacaggggcttgcgcgacgag
gagacagcgcgcttccgcgaggacctgcgcggcgcgctcgactggttacgtgctgcctga
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