KEGG   Pseudomonas putida BIRD-1: PPUBIRD1_1155Help
Entry
PPUBIRD1_1155     CDS       T01975                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ppb  Pseudomonas putida BIRD-1
Pathway
ppb03030  DNA replication
ppb03410  Base excision repair
ppb03420  Nucleotide excision repair
ppb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppb00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    PPUBIRD1_1155
   03410 Base excision repair
    PPUBIRD1_1155
   03420 Nucleotide excision repair
    PPUBIRD1_1155
   03430 Mismatch repair
    PPUBIRD1_1155
Enzymes [BR:ppb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PPUBIRD1_1155
    6.5.1.6  DNA ligase (ATP or NAD+)
     PPUBIRD1_1155
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PPUBIRD1_1155
DNA replication proteins [BR:ppb03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PPUBIRD1_1155
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PPUBIRD1_1155
DNA repair and recombination proteins [BR:ppb03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PPUBIRD1_1155
   NER (nucleotide excision repair)
    Other NER factors
     PPUBIRD1_1155
   MMR (mismatch exicision repair)
    Other MMR factors
     PPUBIRD1_1155
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ADR58837
LinkDB All DBs
Position
complement(1304635..1306293)
Genome map
AA seq 552 aa AA seqDB search
MKAFATLFLRLDATTSSNAKLEALRDYFDMAPADDAAWAVYFLAGGRPRQLVPTRLLREL
ATTLAGLPDWLFEESYQAVGDLAETISLLLPLHADGNEEGLATWVEQHLLPLRGLAPEQV
RQRLPLLWARLDRASLMLCLKLITGSFRVGVSKLLVTRALAQLAGLDANRVAQRLVGYTD
IGHRPTAASYQRLIAPESADEHNQRGGQPYPFFLAHPLQVSSDQFHTLLGPPSDWQIEWK
WDGIRAQVVKRDGQLWVWSRGEELVTERFPELHGLAQTLPDGVVLDGEILVWKPGETEAE
LAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGEDWRSRPQHERRSQLEHLVD
EHPLAPVLLSPMLQGPDWADLARQREQSRSLGVEGLMLKQREALYGVGRTKDMGIWWKWK
IDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDAPAGTPGRALVPFAKAYSGLSDEEMRK
VDAIIRKTTVETFGPVRSVTPTLVFELGFEGIALSRRHKSGIAVRFPRMLRWRLDKPVEE
ADDLATLQALLA
NT seq 1659 nt NT seq  +upstreamnt  +downstreamnt
atgaaagccttcgctacgctgttcctgcgcctggacgcgaccacctccagcaatgccaag
ctcgaggcactgcgggactatttcgacatggcgcctgccgacgatgctgcctgggcggtg
tatttcctggccggcgggcgcccacgccagctggtgcccacccgcctcctacgtgaactg
gcaacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggc
gacctggccgagaccatttcgctgctgctgccgctgcacgccgatggcaacgaggaaggc
ctggccacctgggtggaacagcatttgctgcccctgcgcgggttggcgcctgagcaagtc
cgccagcgcctgccgctgctctgggcccggttggaccgcgccagcctgatgctatgcctg
aagctgatcactggcagctttcgcgtgggcgtgtcaaagctgttggtcacccgcgccctg
gcgcaactggccgggctggacgccaatcgcgtggcccagcgcctggtcggctacaccgat
ataggccatcgcccgactgcagccagttaccagaggctgatcgccccagagtccgccgat
gaacacaaccagcgtggcggccagccctaccccttcttcctggcccatccgctgcaagtg
tccagcgatcaattccataccctgctcggtccaccaagcgattggcaaatcgaatggaag
tgggacggcattcgggcgcaagtggtgaagcgcgatggccagctgtgggtgtggtcacgc
ggcgaagaactggttaccgagcgtttccccgaactgcatggtctggcacagacgttgccc
gatggcgtggtgctcgatggcgagatcctggtctggaaacctggtgaaaccgaggcggaa
ctggccgtgcagccttttgccttgctgcaacagcgtatcggtcgcaaaacgctgggcaaa
aaactgctgaacgatgcgccggtggtgctgcaggcctacgacctgctggagtggcagggc
gaggactggcgcagccgaccgcaacacgaacgccgaagccagctggaacacctggtggat
gaacacccacttgcccccgtgctgttgtcgcctatgctgcaaggcccggactgggccgac
cttgcccgccagcgcgaacagtcacgcagcctgggcgtggaagggctgatgctcaagcag
cgcgaggccctgtacggcgtggggcgcaccaaggacatgggcatctggtggaagtggaag
atcgatcctttcagcgtcgatgcggtgctgatctatgcccaacgcggccacggccgcagg
gccagtctgtacagcgactacacctttgccgtatgggatgcaccggcaggtacccctggt
cgggcgttggtgccctttgccaaggcctattcagggctcagtgacgaagaaatgcgcaaa
gtcgacgccatcatccgcaagaccacggtggaaacgttcggcccggtgcgcagtgtcact
ccaacgttggtgttcgagctgggcttcgaaggcatcgccctgtcccggcgccacaaaagc
ggtattgccgtgcgctttccgcgcatgctgcgctggcggctggacaagccggtggaagaa
gcagatgacctggccaccctgcaggcgctactggcctga

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