Pseudomonas putida BIRD-1: PPUBIRD1_2021
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Entry
PPUBIRD1_2021 CDS
T01975
Symbol
mrdA
Name
(GenBank) MrdA
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb00550
Peptidoglycan biosynthesis
ppb01100
Metabolic pathways
ppb01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PPUBIRD1_2021 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
PPUBIRD1_2021 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppb01011
]
PPUBIRD1_2021 (mrdA)
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
PPUBIRD1_2021 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppb01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
PPUBIRD1_2021 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
ADR59669
LinkDB
All DBs
Position
complement(2274706..2276601)
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AA seq
631 aa
AA seq
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MPQPIPLKDHEKEKHLVNRRLLACAAMVFSLCAVLVGRLYVLQVLQHDQQTAVSENNRVH
VLPIAPERGLIYDRNGVVLADNKPSFDLTMTRERAGSDSAKVLDTLTQVLGLTEDDRKQF
DKDLRRGRKPFEPVTLMVGLSEEQIALVAVNQFRLPGLEVEPQFIREYPLAGHFAHSVGY
VGRINEKEAKTLDSTEYRGTQSIGKTGIERFYESQLHGHVGYEEVETNAQGRVMRVLNHK
DPTPGQDIVLTLDAHLQIAAEKALGDRRGSVVVLDPANGDVLAMVSNPSFDPNLFVKGIS
FKQYAALRDSIDRPLFNRVLRGLYAPGSTVKPEVAIAGLDSGVITPGSRVFDPGYYELPN
YDHKYRNWNRSGDGWVDMYTAIMRSNDTYFYDLAHKLGIDRLHDYMAEFGLGQKVSLDMF
EEASGLMPSAEWKRATRRQAWFPGETLILGIGQGYMQVTPLQLAQATSLLASKGVWHRPH
LAMTVGGDTPIDPNPMPDIVLHDKHAWDQVSQGMQMVMHDPRGIARAAAAGAQYRIAGKS
GTAQVVAIKQGERYNRNKTLERHRDNALFVGFAPAEHPSVVVAVMIENGEAGGRVAGPVV
REVMDAYLLDEQGHLKPEYAGGAPTRGVPHT
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaacccatcccgctaaaggaccacgaaaaggaaaagcacctagtcaaccgtcgg
cttctggcctgcgctgccatggtgttcagcctgtgtgccgtcctggtgggccggctctat
gtgctgcaagtgctgcagcacgaccaacaaacggccgtgtcggaaaacaaccgcgtgcac
gtgctgcccatcgcccccgaacgcgggctgatctacgaccgcaacggcgtggtactggcc
gacaacaagcccagcttcgacctgacgatgacccgcgagcgagcaggcagcgactcggcc
aaggtgctcgacaccctgacgcaggtgctgggcctgaccgaagacgaccgtaagcagttc
gacaaggacctgcgccgtggccgcaaaccgttcgagcccgtgacccttatggtgggtctg
agcgaggagcagatcgccctggtagcggtgaaccagttccgcctgccgggcctggaggtg
gagccgcagttcatccgcgagtacccactggccgggcatttcgcgcattcagtgggctat
gtggggcgcatcaacgagaaagaagccaagacgctcgacagcactgagtaccgcggcacc
caatcgattggcaagaccggcatcgagcgcttttacgaaagccagctgcatggccacgtg
ggctacgaagaggtcgagaccaacgctcaggggcgggtgatgcgcgtgctcaaccacaag
gacccgacccctgggcaggatatagtcctcaccctggacgcccatttgcagatagccgca
gaaaaagcgctgggtgaccgccgtggctcggtggtggtattggatccggccaatggtgac
gtactggcgatggtcagcaaccccagcttcgaccccaacctgttcgtcaagggcatcagc
ttcaagcagtatgccgcgctgcgcgactccatcgaccgcccactgttcaaccgcgtcctg
cgcggcctgtatgcgcctggctcgaccgtgaagcctgaagtggccatcgctggcctcgac
agcggggtgatcacccctggcagccgggtattcgacccgggctactacgaactgcccaac
tatgaccacaagtaccgtaactggaaccgcagcggcgacggctgggtggacatgtacacc
gccatcatgcgttccaacgacacctacttctacgacctggcgcacaagctgggcatcgac
cggctgcacgactacatggccgagttcggcttgggccagaaggtgtcactggacatgttc
gaggaagcctccgggctgatgccctcggccgagtggaagcgcgccacgcgacgccaggcc
tggttcccgggcgagacgctgatccttggcattggccagggttacatgcaggtcaccccc
ctgcaactggcccaggccaccagcctgctggcaagcaagggcgtgtggcaccgcccgcac
ctggccatgaccgtgggcggcgatacgccgatcgacccaaaccccatgcccgacatcgtg
ctgcacgacaagcatgcctgggaccaggtcagccagggcatgcagatggtcatgcacgac
ccgcgcggcattgcccgcgctgcggccgccggtgcccagtaccgaattgccggcaaaagc
ggtacagcgcaggtggtggcgatcaagcagggtgagcgttacaaccgcaacaagaccctg
gagcgccaccgcgacaacgccctgtttgtcggcttcgctccggctgagcaccccagtgtg
gtggtggcggtcatgatcgagaacggtgaagctggaggccgggtcgcagggccggtggtg
cgggaggtgatggatgcttatctgctggatgagcaagggcacctgaagccggagtatgcg
ggcggcgcacccactcggggtgtgccacacacatga
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