Pseudomonas putida BIRD-1: PPUBIRD1_2040
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Entry
PPUBIRD1_2040 CDS
T01975
Symbol
alr
Name
(GenBank) Alr
KO
K25317
amino-acid racemase [EC:
5.1.1.10
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb00260
Glycine, serine and threonine metabolism
ppb00270
Cysteine and methionine metabolism
ppb00310
Lysine degradation
ppb00470
D-Amino acid metabolism
ppb01100
Metabolic pathways
ppb01120
Microbial metabolism in diverse environments
Module
ppb_M00960
Lysine degradation, bacteria, L-lysine => D-lysine => succinate
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
PPUBIRD1_2040 (alr)
00270 Cysteine and methionine metabolism
PPUBIRD1_2040 (alr)
00310 Lysine degradation
PPUBIRD1_2040 (alr)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PPUBIRD1_2040 (alr)
Enzymes [BR:
ppb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.10 amino-acid racemase
PPUBIRD1_2040 (alr)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
DUF5604
Motif
Other DBs
NCBI-ProteinID:
ADR59688
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All DBs
Position
2300534..2301676
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AA seq
380 aa
AA seq
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MDNGTNTLTVQNSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPS
IIAQGVPCVAVASNEEARVVRASGFTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQ
ADAIAARHGKTLRIHMALNSSGMSRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAVE
DKDDVRKGLAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFGD
TVPGRTEYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFT
NKGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQAGGEITQAEMEEING
ALLADLYTVWGSSNPKMLVD
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atggacaacggcaccaacaccctgaccgtgcagaacagcaacgcctgggttgaggtcagt
gccagcgctctgcaacacaatatccgcaccctgcaggccgagctggccggcaagtccaag
ctgtgcgctgtgctcaaggccgatgcctatggccacggtatcggcctggtaatgccatcg
atcatcgcccagggcgtgccctgcgtggcggtggccagcaacgaggaggcccgcgtggtc
cgcgccagtggcttcaccgggcaactggtgcgggtacgcctggccagcctcagcgagctg
gaagatggcttgcagtacgacatggaggagctggtgggcagcgcggaattcgcccgccag
gccgatgccatcgccgcgcgccatggcaagaccctgcgcattcacatggcgctcaactcc
agcggcatgagccgcaacggggtggagatggccacctggtccggccgtggcgaagcgctg
cagatcaccgaccagaagcacctcaagctggtcgcgctgatgacccactttgccgtggag
gacaaggacgatgtccgcaagggcctggcagccttcaacgagcagaccgactggttgatc
aagcacgcgaagctcgaccgcagcaagctcaccctgcacgccgccaactcgttcgctacg
ctggaggtgccggaagcgcgcctggacatggtgcgaacggggggcgcgctgttcggcgac
accgtgccggggcgcactgagtacaagcgtgcgatgcagttcaaatcgcatgtggcggcg
gtgcacagctatccggctggcaacaccgtgggctatgaccgcaccttcaccctggcccgt
gattcgcgtctggccaacattacggtcgggtactccgatggctaccgccgggtattcacc
aacaagggccatgtgctgatcaacggccaccgtgtgccggttgtgggcaaggtgtcgatg
aacacgctgatggtcgatgtcaccgacttccctgatgtgaaggggggcaacgaagtggtg
ctgtttggcaagcaggccgggggcgaaatcacccaggccgagatggaagaaatcaacggc
gcgttgctcgccgatttgtacaccgtatggggcagttccaacccgaagatgctcgtcgac
tga
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