Pseudomonas putida BIRD-1: PPUBIRD1_2515
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Entry
PPUBIRD1_2515 CDS
T01975
Symbol
ligD
Name
(GenBank) LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPUBIRD1_2515 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_2515 (ligD)
Enzymes [BR:
ppb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPUBIRD1_2515 (ligD)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPUBIRD1_2515 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADR60141
LinkDB
All DBs
Position
2858643..2861147
Genome browser
AA seq
834 aa
AA seq
DB search
MAKPLQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLQGEKLAGVWNLFRTHLAGKKEQWMLVKSHDAQARSETEYSIVEALPDSVL
SERTLVPRKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDTAWLDGEMVVADENGMADFQ
ALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQQRRDTLRQLLEHNHCDVIKYSADFD
EPVESLLDSACRLKLEGLIGKRADSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSG
FGALLLALHDNESGELRYAGKVGTGFNTTTLTSIHTRLKPLEIASPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRHKQANAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLHIPNVLSYEKAEAGQAAMVINRPDTLLGAVQMNTLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLALTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVSYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHERLAEVDDPWADMGKVRQSITARMRKQLGLER
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccttgcaggaatatgcgcgcaagcgcgacttcaacgcgacacccgagccc
agcggcaaacgcaaacgtggcaagcgggctcatgcgctgcagttctgcatccagaaacac
gacgccagtcacctgcactacgacttccgcctcgagctcgacggcaccctgaaaagctgg
gcgatccccaaaggcccatcgctggaccccaaggtgcgccgcctggcagtgcatgtggag
gaccatccgttggactacgccgatttcgaggggcatatccctgaaggccactatggtgca
ggcgatgtgatcgtctgggaccgcggtatctgggagcctgaaggcgatgcccatgaagcc
tacgccaaaggcaagctgcgtttccgcctgcaaggcgagaagctagccggcgtgtggaac
ctgtttcgcacacacctggctggcaagaaagaacaatggatgttggtcaagtcgcacgac
gcccaggcgcgcagcgaaaccgagtacagcattgtcgaggccctgccagacagcgtgctc
agcgagcgcacgctggtgccacgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgataaagttcaggctgcacccttgccagcacagctacagccacag
ctggcaacgttggtggattctccaccgagcggcgactggcgctacgaagtcaagttcgat
ggctaccgcattctggcccgcatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccgtcaggttgccgccctgcgcgcgctcggtatcgac
acggcttggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaatgccttcgataccgagcacgacgaacgcatcacctattacctgttcgac
ctgccatttctgggcggtcaggacctgcgacagctaccgctgcagcaacgccgcgatacg
ttgcgccaactgcttgagcacaaccattgcgacgtcatcaagtattccgccgacttcgac
gaacctgtcgagtcgctactcgacagtgcctgccggctgaagctggaaggcctgattggc
aagcgtgctgacagtgtttacagcggccgccgtagcccagactggatcaagctcaagtgc
aagcaacgccaagaattcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggc
ttcggtgccctgctgctggccctgcacgacaatgagagtggcgagctgcgctatgccggc
aaggttggtaccggcttcaacaccacgacactgaccagcatccacacgcggctcaagccc
ttggaaatcgccagccctgccctgccctcgccacctgccggagccgaagcgcgtggtgtg
cactggctgcggccgcagttgttggctgaagtcgcctttgcccagatgacccgtgacggc
atcgtgcggcattcggtgttccacggcctgcgcgatgacaaggcggcaaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgccacaagcaggccaatgcgtct
gagaatctgggtgaactgcggctgacccaccctgaccgggtcatcgatcccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccccag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcctgggtggcgagctgttc
ttccagaaaaacgcgggccagctgcacatacccaacgtactcagttatgaaaaggccgag
gcaggccaggcggcgatggtcatcaatcgcccggacacgctgctgggcgcggtgcagatg
aatacgctggagctgcacacctggaacgccacggacaaggatttcgacaaaccggaccgt
tttgtcctcgacctggaccctgaccctgcgctgccttggaaggcgatggtggaggcgacc
caactggccctcaccctgctggacgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccggcgcgccggctgggacgaagtcaag
gacttcagccacgccatcgtcagttacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcatcttcatcgactacctgcgcaatggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcgtctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatgcgcaagcagctagggctcgaaagatga
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