Prunus persica (peach): 18789278
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Entry
18789278 CDS
T03092
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
pper
Prunus persica (peach)
Pathway
pper03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18789278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pper03036
]
18789278
Chromosome and associated proteins [BR:
pper03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
18789278
Chromatin remodeling factors
NuRD complex
18789278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
DUF1087
Chromo
Helicase_C
HDA2-3
ResIII
PHD
CHDCT2
Myb_DNA-binding
DUF2703
C1_1
C1_2
zf-PHD-like
Motif
Other DBs
NCBI-GeneID:
18789278
NCBI-ProteinID:
XP_020422751
LinkDB
All DBs
Position
G1:complement(34887065..34901474)
Genome browser
AA seq
1439 aa
AA seq
DB search
MSSLVERLRVRSDRRPVYNIDESDDEADFVTRKPGTAEEKFEKIVRSDAKENSCQACGET
GNLLCCETCSYAYHSKCLLPPPRSPLPGNWRCPECVSPLNDIDKILDCEMRPTVAGDSDA
SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKAHPRLKTKVNIFHRQMESSNNS
EDDFVAIRPEWTTVDRILACRGDDEKEYLVKWKELSYDECYWESESDISAFQPEIERFNR
IQSRKSKMLSSKQKSILKDAMESKKKQKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSW
SKQTHVILADEMGLGKTIQSIAFLASLFEEKVGPHLVVAPLSTLRNWEREFATWAPQMNV
VMYVGSAQARAVIREYEFYFPKNHKKIKRKKSGQIVSESKQERIKFDVLLTSYEMINLDS
TSLKPIKWECMIVDEGHRLKNKDSKLFSSLQQYCTSHRVLLTGTPLQNNLDELFMLMHFL
DAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVDLS
SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDSNESYK
QLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTFKKWQYERIDGKVGGA
ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL
GQTNKVMIYRLVTRGSIEERMMEMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKEL
FVDENDEAGKSRQIHYDDAAIDRLLDREQAGDDEAMLDDEDEDGFLKAFKVANFEYIDEA
EAVAEEEPQKAAVDSRPTVNSSERTNYWEELLRDKYEVHKVEEFNALGKGKRSRKQMVSV
EDDDLAGLEDVSSDGEDDNYEADIMEGETSSSGTLSGRKPNKKRSRVDSAEPPPLMEGEG
RSFKVLGFNQSQRAAFVQILMRFGVGEYDWKEFTPRMKQKTFEEIENYGRLFLAHIAEEM
TDSPTFSDGVPKEGLRIGDVLCRIAVLMQMQQRVDLASKNPGTPLFSEDILLLYPGLKGG
KFWKEEHDLTLLRAVLKHGYGRWQAIVDDKDLRLQEVICQELNLPFINLPVPGQANSQAQ
NGARTANTEGPSNHASENGTGSDIGANVAQGTSDAANQPQLYQDSSVLYQFRDMQRRQVE
FIKKRVLLLEKGNNVDLAKEQGENSNEVPSEEPDSEPKVTRMSSPHPMEIDGQTVDQLPG
IVKITSEEIFAAVCDNDPDRLKLPHLYNEMCKLVEENAHELVQTKLGTICEEISRILSTV
QQNSSNLAEPIVNPNKQSQAKTKSNVVVPGSSADQGDNKHAAVADVDMTDLAAEPKHTIS
DLDPDPEEEEESRELHRDVQAPAGSGSPQLGRTNLAGNSGNGVGEGIAEKPEQVIVLDD
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcttggttgagaggcttcgcgttaggtcagaccgaaggccagtttacaacatt
gatgaatcagatgatgaggccgattttgtaactagaaaacctgggacagctgaggaaaag
tttgaaaagattgttaggagcgatgcgaaagagaattcatgtcaagcctgtggcgaaact
gggaatcttttgtgctgtgaaacatgcagttatgcttaccattctaagtgtttacttcca
ccaccgagatctcctctccctggcaactggagatgccctgaatgtgtaagcccattaaat
gatattgataagatcttggactgtgaaatgcgccctactgtggctggtgatagtgatgcc
tcaaagctgggctcaaagcaaatttttgtaaaacaatatcttgtgaagtggaagggactc
tcttatttgcattgcacatgggttccagagaaggagttcgtgaaagctttcaaagctcat
ccacgtctgaagactaaagtgaacattttccatcgtcaaatggaatcaagtaataactct
gaggatgattttgtcgccattcgacctgaatggacaactgttgatcgaattctggcctgc
aggggagatgacgagaaagaatatctagtgaagtggaaagaactatcatatgatgaatgc
tattgggaatcagagtcggacatatctgcatttcagccggaaatagagagattcaacaga
attcagtctaggaaaagtaaaatgttgtctagtaagcagaagagcattcttaaagatgct
atggaatcaaaaaagaagcagaaagagtttcaacagtatgaacatagtcctgaatttctt
tctggaggctcactccatccatatcagcttgaagggttgaacttcttacgtttctcctgg
tccaaacaaactcacgtgatacttgcagatgaaatgggactcggaaaaactatacagagt
attgcttttttagcatctctttttgaagagaaagttggtccacatctggtggtggctcca
ctttcaacattgagaaattgggaacgtgaatttgcaacgtgggcacctcaaatgaatgtt
gttatgtatgttggctctgcccaagcccgtgctgtcatacgggaatatgaattttacttt
cccaaaaatcacaagaagattaagagaaagaaatctggtcaaattgttagtgaaagtaag
caagaaaggatcaaatttgatgtcctcctgacatcatatgaaatgatcaacttagactca
acatcactaaaaccgataaagtgggagtgtatgattgttgatgaaggtcatcgtctcaaa
aataaggattcaaagttattttcatcattacagcagtattgcactagtcatcgtgtgctt
ctgactggaactcctcttcagaacaatctggacgagctctttatgcttatgcactttctt
gatgccgggaagttcggaagtctagaggaattccaggaagagtttaaggatatcaatcaa
gaggagcagatttcacggcttcacagaatgttggcacctcatcttcttagaagagtgaaa
aaagatgtcatgaaggaactacctcctaaaaaggaacttatattacgtgttgatttaagt
agcaaacagaaagagtactacaaagcaattctgacacgtaactatcagatattaactcgt
cgaggtggtgcacagatatctcttatcaacgtggtcatggaattgcgcaagctttgttgt
catccttatatgttagagggagttgaaccagacatagaagattcaaatgaatcttacaaa
cagctattggaatcttctgggaaattgcaattgttggacaaaatgatggtgaaacttaag
gagcaagggcatagagttctcatatattcacaatttcagcacatgctggatttgctagaa
gactattgtactttcaaaaaatggcagtatgaacggatagatggaaaagttggtggagct
gagagacaaataagaatagatcgatttaatgccaaaaattcttccaggttttgttttctg
ctttctactagagctgggggcttaggaataaaccttgcaactgctgacacagtgatcata
tatgacagtgattggaatcctcatgctgatctacaagctatggctagagctcatcgactt
gggcaaactaacaaggtaatgatttataggctagtaactcggggaagtattgaagaacgg
atgatggaaatgactaagaagaaaatggtattagagcatttggttgttggaaggttaaag
gctcagaacatcaaccaggaagagttagatgacatcataaggtatggatcgaaggagtta
tttgttgatgaaaatgatgaagcaggaaaatcccgtcaaattcattatgatgatgctgcc
atagatagattacttgatcgtgaacaagctggggatgatgaggctatgttggacgacgaa
gatgaagatggatttttaaaggccttcaaggtggcaaattttgaatatattgatgaagca
gaggctgtagcagaggaggaaccacaaaaagctgccgtggacagtagacccaccgtgaac
agttccgaaagaacaaattactgggaagagttattaagagacaaatatgaagtgcataaa
gttgaagagtttaatgctttgggcaaaggaaagagaagccgtaagcagatggtatctgtt
gaagatgacgaccttgctggtttggaagatgtaagttctgatggtgaggatgataactat
gaagctgacataatggagggtgaaacatcatcatcaggaactctttctgggaggaagcct
aacaaaaagagaagtcgtgtggatagtgcagagccccctcccttgatggaaggagaagga
agatcattcaaagttttgggtttcaatcaaagtcagagagccgcatttgtacaaattttg
atgaggtttggggttggggaatatgactggaaagagtttacacctcgcatgaagcagaag
acatttgaagaaatagagaattatggtagactattcttggctcacatagctgaagagatg
accgactccccaaccttttcagatggtgttcctaaagaagggctcagaataggagatgta
ctttgtaggattgctgttctgatgcagatgcagcaaagggtggacttggcatcaaagaat
ccaggcactccgcttttttcagaggacatcctgttgctctaccctggattgaagggtgga
aaattttggaaagaggaacatgatttaacattgttgcgtgctgtactaaagcatggatat
ggaagatggcaagctatcgttgatgacaaagacctgaggcttcaagaagttatctgtcaa
gagttgaatcttccctttataaacctaccagtccctggacaagctaatagtcaagcacaa
aatggtgcgagaacagctaacacagaaggacctagcaaccatgctagtgaaaatggtacc
ggaagtgatataggagctaatgttgcccagggaaccagtgatgctgcaaaccaacctcag
ttatatcaagattcgtctgtgctgtatcaatttagagacatgcagagaagacaggtagaa
tttatcaagaaaagagtgcttctcttggagaaaggcaacaatgtagatttggcgaaagaa
cagggtgaaaattcaaatgaggttccgagtgaagagcctgacagtgaacccaaggttaca
agaatgtcaagccctcatcctatggagattgatggacaaacggttgatcagttgcctgga
atagtaaagatcacttctgaagaaattttcgcagctgtttgtgacaacgatccagatcga
ttgaagttgcctcacctttataatgagatgtgcaagcttgtggaggaaaatgcccatgaa
ttagttcagaccaaattaggaaccatttgtgaagaaataagcaggattctctctactgtg
caacaaaattcttctaatttggccgagcccatagtcaatcctaataagcaatcacaagcc
aagacaaagagcaatgttgtagttcccggatcatcagctgatcaaggtgacaacaagcat
gctgctgtggcggacgttgacatgacagatttggctgcagaacccaaacatacaatctcg
gacttagaccctgacccagaagaggaagaggaaagtagagaactacatcgtgacgttcaa
gctcctgcaggttcgggttcgcctcagttgggccggacaaatctggccggaaactctgga
aatggtgtgggagagggaattgcagaaaaacctgagcaggtcatagtattggatgattag
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integrated database retrieval system
