Pseudomonas putida F1: Pput_4538
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Entry
Pput_4538 CDS
T00537
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pput_4538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppf03400
]
Pput_4538
Enzymes [BR:
ppf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pput_4538
DNA repair and recombination proteins [BR:
ppf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pput_4538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ABQ80658
UniProt:
A5W948
LinkDB
All DBs
Position
complement(5067408..5070890)
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AA seq
1160 aa
AA seq
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MPHTAHLHPGFMIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPLEDDQGGCGIAAAIDVQLPGSFMWQLYRSVLGRSEIPEVSLLDKAPLTWRLMRLLPAL
IERPHFEPLRRFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWASGEHVINTARGE
RKVLPPGNRWQAELWRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFG
ISSLPAQALEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQL
DDQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNEL
QDDILELRPLAESRERWPPVDTTKDRSIRFHVAHSPQREVEILHDQLLARFSADPTLRPR
DVIVMLPDIDTYAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSR
FAVSEVLDLLDVPAVRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNS
WRFGLRRMLLGYAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATV
SQWGERLHALLHVFFLAEDEGDEFLLMQLQDLRDSWLEVCETVGLHDPLPLTVVREAWLS
GLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLAD
AQQGQPAKPGEQLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGEADEQSEPG
LPPYQDAEALSLHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASE
SLLGAALAEPDNAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQR
WPQLVEGALPVHFEHGQHRLEGWLGRVFQAEDQSLLSITTVPNTISAGRNNLKWHRLIAP
WATHLAACAAGYPYNSALVASDLTLLLAPLPQALAAQLLGDLLVARQAAMNAPLPVAAKT
AFAWLAQDDADKAMAAAARAYEGDERTSFGERSESIALARQFRDFAALTADETFEGWCET
LYRPLFTAPWQTLGNPEKGA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccccacaccgcccatctccacccaggcttcatgatcgtccacggcaaccgcctcgac
gacctgcgtagcctggtagtgagctggatgcgtcgctacccgctggcgcctctggaaaac
gaaattgccctggtgcaaagcaatggcatcgcccaatggctgaagctggccctggctgaa
gatccgctggaagatgaccaaggcggctgcggcatcgccgctgccatcgatgtgcaactg
cccggtagctttatgtggcagctctaccgcagcgtgcttggccgtagcgaaattcccgaa
gtgtctcttctcgacaaggcaccactgacctggcggctgatgcgtctgttgccagcgctc
atcgagcgtccgcatttcgagccactgcggcgcttcctcaccgacgacagtgacttgcgc
aagcgctaccagctagccgagcgcctggccgacctgttcgaccagtaccaggtctaccgt
gccgattggctcaaggactgggccagtggcgagcacgtcatcaacacggcccgcggcgag
cgcaaagtactgccgccaggcaaccgctggcaagccgagttgtggcgagcattactggag
gatgttggcgagcaaggcatggcgcagagccgcgccggagtacaccaacgtttcatcgag
cgcatcaacagcctggagcaggcgcctgcagggctgccaccgagggtgatcgtgttcggt
atctcttcgctgccggcccaggccctggaagcgctggcaggcctgtcgcgtttcagtcag
gtattgctgtgcgtacacaacccatgccgccaccactgggccgatatcgtcgccgacaag
gacctgttgcgccaccagtacaaacgccagcaacgcaagcaaggcatgcccctgcaattg
gacgaccagacgctgcaccagcatgcccacccattgctggcagcctggggtaaacaaggc
cgcgactacatcaacctgctcgacagctatgatgacccaggcagctaccagggcgtgttc
agcgacggccgcatcgacctgttcagcgacggttcgcccaccacgctgctaaacgaactg
caggacgacatcctggagttgcgcccgctcgccgagagccgcgaacggtggccgccagtc
gacaccacaaaagaccgctcgatccgcttccatgttgcgcacagcccgcaacgtgaagtg
gagatcctccacgaccagctgttggcccgcttcagcgccgacccgactttgcgcccgcgc
gacgtaatcgtcatgctgccggacatcgacacttacgcgccgcatatccgcgccgtcttc
ggccagttgcagcgcaacgacccgcgctacatcccgttcaccctgacagaccagggccag
cgtggtcgcgagcctttgctgatcgcgcttgagcacctgctcaaactgcctgacagccgc
ttcgcggtcagcgaagtgctcgacctgctggacgtgccggcagtccgcgcccgcttcggc
atccgcgaaaacgatctgcccacgctgcaccgctggatcgagggcgctggcatccgttgg
ggccttgacgccgcgcagcgggcgagcctgggcttgcccgccgggctcgaacagaacagt
tggcgtttcggcttgcgccgcatgctgttgggttatgccgtgggggtgggtgaggcctgt
gatggtattgagccctacgatgaaatcggtggcctggacgcggcactgatcggcccgctg
gtcgcgttgctggatgcgctcgaagtcgcctgccaggccttgtccgagcctgccaccgtc
agccagtggggcgagcgactgcatgccttgctgcacgtgttcttcctcgccgaggacgag
ggtgatgagttcctgttgatgcagttgcaggatttgcgtgatagctggcttgaggtgtgc
gagaccgtcggcctgcacgacccgctaccgcttaccgtggtgcgtgaagcctggttgtcg
ggccttgatcagggcaagctgtcacaacgtttcctcgccggctcggtcaacttctgcaca
ctcatgcccatgcgcgcgatcccgttcagggtggtctgcctgctgggcatgaacgatggc
gattatccgcgtgcgcagccaccgctggacttcgacctgatggccagcgactatcgcccc
ggcgaccgctcacgccgcgaagacgaccgttacctgttgcttgaagcgctactgtccgca
cgtgaccaactgtatgtcagctgggtcgggcgcagtattcgcgacaatagcgaacgcccg
gcctcggtgctgatcggccagttgcgcgatcacatcgctgcgggctggcatttggccgac
gcgcagcagggccagcccgcgaaaccgggcgagcaactgttgcacgcactgacccaggag
cacccgctgcagccgttcagccctcggtacttccagaagggcagcccattgttcagctat
gcccatgaatggcaggtgctgcaccagcaaggtgaggcagacgagcagagcgagccgggc
ctgccgccttatcaggacgctgaagccctgagtttgcaccagctgaatgacttcttgcgc
cacccggtacggcacttcttcagccagcgcttgaaggtgtactttgaggcgctggaagcg
ccgaccccggacgaggaacccttcgtcctcgataccctgcaacgctacggcgccagtgaa
agcctgcttggcgccgccttggccgaaccggacaacgccgaacaggccttgcgcgcccag
gcccgacgcctgcaggcctgcggtttgctgccgctagcaggtttcggcgaactgctgcaa
aacgagttgatcgaaccgctgccggacctgctgcaacgtcaccagcaattgctgcaacgc
tggccacagctggtcgagggcgctttgccggtgcatttcgagcacggtcagcaccgtctg
gagggctggctgggccgggtgttccaggcggaagatcagagccttctcagcatcaccaca
gtacccaacactatcagtgccgggcgcaacaacctgaagtggcaccgccttatcgcgccc
tgggctacgcacctggcggcctgtgcagcgggctacccctataacagtgcattggtagcc
agtgacctgaccctgttgcttgcaccgctgccgcaagcgctggccgcgcaactgctgggc
gacctactggtggcccgtcaggcggcaatgaatgcgccgttgccagtcgcggccaagacc
gcgttcgcctggttggcccaggacgatgccgataaagccatggccgcagcagctcgcgcc
tacgaaggcgacgaacgcaccagttttggcgaacggagtgaaagcattgccttggcccgc
cagttccgggactttgcagcactcactgctgacgaaacgtttgaaggctggtgcgaaacc
ttgtatcgcccgttgttcaccgccccttggcagaccttgggcaacccggagaaaggcgca
tga
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