Pseudomonas putida GB-1: PputGB1_2635
Help
Entry
PputGB1_2635 CDS
T00650
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PputGB1_2635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_2635
Enzymes [BR:
ppg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PputGB1_2635
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PputGB1_2635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABY98534
UniProt:
B0KSK9
LinkDB
All DBs
Position
2951369..2953870
Genome browser
AA seq
833 aa
AA seq
DB search
MAKPLQEYARKRDFSATPEPDGRRSRGKQAHALLFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGQARSEADYSIVEAQPDSVL
SDRTLLPRKAAAKKATTPRTNRQRTGKGQHAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRIMARIDGEDIRLFTRNGHDWSSKMPRQVAALRALGVGSAWLDGEMVVVDENGAADFQ
ALQNAFDTEHDEGIAYYLFDLPFLGGRDLRQVPLQGRRDTLRQLLGHDESDVLKFSADFD
QPVESLLDSACRLQLEGLIGKRVDSPYSGRRSSDWVKLKCKQRQEFVIVGYTDPKGSRSG
FGALLLALHDNDSGELRYAGKVGTGFSDTTLATLLARLTSLETAKPAVARPPTGAEARGV
HWLQPKLLAEVAYAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVPKRSKQAKTS
ETPDELHLTHPDRVIDATLGATKREVAEYYADISQWILPQLKHRPVALVRAPDGLAGELF
FQKNAGQLHIPNVLSYEKAEAGQAAMVINRPDTLLGAVQMNMLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
GFSHAIVNYLATLFPDRLSAVSGPKNRVGRIFIDYLRNSKGATTACAYSLRAREGLPVSV
PIWREELVQLKAANTWNIANVRERLAAVEDPWADLGKVRQSITARMRKQLGLS
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggaatatgcgcgcaagcgtgacttcagcgccacgcccgagcca
gacggcaggcgcagccgtggtaaacaggcccacgccctgctgttctgcatccagaagcat
gacgccagccacctgcactatgacttccgcctggagcttgatggcaccctgaagagctgg
gcgatccccaaggggccgtcgctggaccccaaggtgcgccgactggccgtgcatgtggag
gaccatccgctggactacgccgacttcgaggggcatatccccgaaggccactatggtgca
ggcgatgtgatcgtttgggaccgtggcatatgggagcccgagggcgatgcccgtgaggct
tatgccaaaggcaagctgcgctttcgcctgcagggtgaaaagctcagtggtgtgtggaac
ctgtttcgcacccacctggccggcaaaaaggagcaatggatgctggtgaagtcccacgat
ggccaggcgcgcagcgaagctgactacagcattgtcgaggcccagcctgacagcgtgctc
agcgaccgcaccttgttgccacgcaaggccgctgcaaaaaaggccactacaccgcgcacc
aaccgtcaacgcaccggaaaaggccagcatgcgccgttgccagcgcagctacagccgcag
cttgcaacgttggtggattccccgcctagcggcgactggcgctatgaagtcaagttcgac
ggctaccgcatcatggcccgcatcgacggcgaagatatccgcctgttcacccgcaatggc
cacgactggagcagcaaaatgccccggcaggtcgctgccttgcgcgcgctgggtgtcggt
tcggcctggctcgacggcgaaatggtggtggttgacgaaaatggcgcagcagacttccaa
gccttgcagaacgccttcgataccgagcatgacgaaggcattgcctattacctgttcgac
ctgccgtttcttggtggtcgggacctgcgtcaggtaccgctgcagggccgccgcgacacc
ttgcgccaactgcttgggcacgatgagtcggacgtactcaagttttctgccgactttgac
cagcctgtcgaatccctgctcgacagcgcctgccgtctgcagctcgaagggctgatcggc
aaacgcgtcgacagcccgtacagtggccgccgcagctcggactgggtcaagctcaagtgc
aagcaacgccaggaattcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggc
ttcggggccttgctgctggctctgcacgacaacgacagtggtgagctgcgctatgccgga
aaggtaggtaccggcttcagtgataccaccctggccaccctgcttgcccggttgacgtct
ctggaaactgccaagccagccgtggccaggccgcccaccggtgccgaagcccgtggtgtg
cattggctgcaaccgaaactgctcgctgaagtcgcctatgcccagatgacccgtgatggc
atcgtacgccactcggttttccacggcctgcgcgacgacaaggcggcaacagctatcgac
ctggagcgcgccatgcccgccaagaccgtgcctaagcgcagcaagcaggccaagacgtct
gaaaccccggatgaactgcacctgacacatcctgacagggtgatcgacgccaccctgggt
gcgaccaagcgcgaagtcgccgaatactatgccgacatcagccaatggatcctgccacag
ctcaagcaccgcccggtggcgctggttcgcgcaccggacggcctggccggcgagctgttc
ttccaaaagaacgcgggccagctgcacatacccaacgtgcttagctacgaaaaggccgag
gccggccaggcggcgatggttatcaatcgcccagacacgctgctaggcgcggtgcagatg
aacatgcttgaactgcacacctggaacgccacggacaaggacttcgacaaacccgaccgc
ttcgtgctcgacctggaccctgaccccgcgttgccctggaaggccatgctggaggcgact
cagctcacccttaccctgcttgacgagctaggcctgaaggtgttcctgaaaaccagtgga
ggcaaaggcattcatgttgtagtgccgttgacccggcgcgccggctgggacgaagtcaaa
ggcttcagccacgccatcgtcaactatctggccacgttgttcccggaccgtctcagcgcg
gtgtctgggccgaaaaaccgtgttgggcgcatcttcatcgattacctgcgcaacagcaaa
ggcgccaccaccgcgtgcgcttactccctgcgagcccgagaggggctgcctgtttcggtg
cccatatggcgcgaggagctggtgcagctcaaggccgccaacacgtggaacatcgccaac
gtgcgcgagcgtctcgcagcagtcgaagacccatgggccgacctgggcaaggtgcgtcag
tccatcactgcccgcatgcgcaagcaactggggctctcgtga
DBGET
integrated database retrieval system
