Pseudomonas phenolilytica: HU825_14215
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Entry
HU825_14215 CDS
T08532
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pphn
Pseudomonas phenolilytica
Pathway
pphn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU825_14215 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphn03400
]
HU825_14215 (ligD)
Enzymes [BR:
pphn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU825_14215 (ligD)
DNA repair and recombination proteins [BR:
pphn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU825_14215 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UIP87635
LinkDB
All DBs
Position
2966629..2969193
Genome browser
AA seq
854 aa
AA seq
DB search
MALDEYQRKRDFAATPEPAGTHKRTRRSEQALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPAVRRLAVHVEDHPLDYASFEGHIPEGHYGAGDVIVWDRGVWLPDGDPQVGY
RKGKLKFTLQGEKLAGSWNLVRTRMEGKQEQWFLIKSRDEAAREQADYDITAAQPDSVLS
ERTLVPRRRGTARKRTEEDPPKPVKRPGRTRKGAATKAPPQALPGAVAADLPATLTPQLA
TLVDAVPSGDWRYEIKFDGYRILARIDAGRVQLFTRNGHDWTAKMPQQAAALAGLGLQSG
WLDGEVVVPDESGTPDFQALQNAFEAGRSGGILYYLFDAPYLNGLDLREVPLEQRRAALR
EVLARSDSDLLRFSEDFTEAPQSILESACQMKLEGLIGKRGGSSYVGKRSSSWVKIKCGN
RQEFIIVGYTAPKGTRTGFGALLLGLHDDDGQLRYAGKVGTGFDVATLTSLHRRLQALEI
ARCPLDKAPPATDVRGAQWLEPKLMCEVAYAEMTRQGVVRHAVFHGLRTDKPAQAITRER
ARPVSAARSRGGRRKADDPLADTGVRISNPERVIDPHSGTTKLELARFYARLAPWLLPQL
RDRPLALVRAPEGITGELFFQKHADKLSIPHITQLDPALDKHGALLVIDSRDALVGAAQM
GTIELHAWNAVAPGLEHPDRFVLDLDPDPALPWKRMVEATQLTQTLLDEIGLQSFLKTSG
GKGLHIVVPLAPVHGWSEVKAFSHAIARYLAKLLPGHFSAVSGPKNRVGRIFIDYLRNSR
GASTVSAYSVRARPGLPVSVPIHRDELSELQGANLWTVGNLFERLQELGEADPWAELPTV
RQRIDDDMRARLGG
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgacgagtaccagcgcaagcgtgatttcgccgccacgcccgagccggctggc
acgcataagcgcacccggcgcagcgagcaggcgctgcagtactgcatccagaaacatgac
gccacgcgactgcattacgacttccgcctggaactcgacggcacgctgaagagctgggcg
attcccaaggggccgagcctggacccagcggtgcgccggctggcggtccatgtcgaggat
catccgctggactatgccagcttcgaggggcatatccccgaagggcactacggcgccggt
gacgtgatcgtctgggatcgcggcgtctggctaccggacggtgatccgcaggtcggttat
cgcaagggcaagctgaaattcaccttgcagggcgagaagctcgccggcagctggaatctg
gtgcgtactcgcatggagggcaagcaggagcagtggttcctgatcaaatcccgcgatgag
gccgcgcgcgagcaagccgattacgacatcaccgccgcccagccggacagcgtgctcagc
gagcgcactttggtgccgcgccgccgcgggacggcgcgcaaacgcaccgaggaagatccg
cccaagccggtgaagcgcccaggtcgcacgcgaaagggcgcggcgaccaaggcgccgccg
caagcgctaccgggcgccgttgccgctgacctgccggccacgctgacaccgcagttggcc
acgctggtggatgcggtgccgagcggtgactggcgctacgagatcaagttcgacggctac
cgcatccttgcgcgcattgatgcggggcgggtgcagctgttcacccgcaatggccatgac
tggacggcgaagatgccgcagcaggctgccgcgcttgccgggctcgggctgcaatcgggc
tggctcgatggcgaggtggtggtgccggacgagagcggcacgccggatttccaggcgctg
cagaatgccttcgaggccggccgcagtggcggcatcctctattacctgttcgatgcgccg
tacctgaacgggctggacctgcgcgaggtgccgctggagcagcgtcgcgcggcgttgcgt
gaagttctggcgcgtagcgatagcgatctgctgcgtttttccgaggatttcaccgaggcg
ccgcagagcattctcgaaagcgcctgccagatgaagctcgaagggctgatcggcaagcgc
ggcggcagcagctatgtcggcaagcgcagcagcagctgggtcaagatcaagtgcggcaac
cgccaggaattcatcatcgtcggctacaccgcccccaagggcacgcgcaccggtttcggt
gcgttgctgctggggctgcatgacgatgacgggcagctgcgctacgccggcaaggtgggc
acaggcttcgatgtggcgacgctaaccagcctgcatcggcgcttgcaggcgctggaaatc
gcccgctgcccgctggacaaggcgccgccggcgaccgatgtgcgcggcgcgcaatggctc
gaaccgaagctgatgtgcgaagtggcctatgccgagatgacacgccagggcgtggtgcgg
catgcggtgttccatggcctgcgcaccgacaaaccggcacaggcgatcacccgcgagcgc
gcccggccggttagcgcggcgcgcagccggggcggcaggcgcaaggcggacgatccgctc
gccgacaccggcgtgcgcatctccaacccggaacgcgtcatcgacccgcacagcggcact
accaagctcgaactggcgcgcttctacgcccgtctcgcgccgtggctgctgccgcaactg
cgcgatcgcccgctggcgctggtgcgcgcgccggaaggcatcaccggcgagctgttcttc
cagaagcacgcggacaagctgagcatcccgcacatcacccagctcgatccggcgctcgac
aagcacggcgcgctgctggtgatcgacagccgcgacgcgctggtcggtgcggcacagatg
ggcaccatcgagctgcacgcctggaatgccgtcgcccccgggctggagcacccggaccgt
ttcgtgctcgacctcgacccagaccccgccttgccgtggaaacgcatggtcgaggctacc
cagctgacccagacgctgctggacgagatcggcctgcagtcgtttctcaagaccagcggc
ggcaagggactgcacatcgtcgtgccgctggcgccggtgcatggctggagtgaagtgaaa
gccttcagccatgccatcgcccgctatctcgccaagctgctgccgggccacttttccgcc
gtcagcggaccgaagaaccgcgtcggccgcatcttcatcgactacctgcgcaacagccgc
ggcgccagcacggtgtcggcctattcggttcgcgcacggccgggactgccggtttccgtg
cccatccaccgcgatgagctgagcgaattgcagggcgccaacctgtggacggtcggcaac
ctgttcgagcgtctgcaggagctgggcgaggcggatccctgggctgagctgccaacggta
cgacaacgcatcgacgacgacatgcgcgcacgccttggcggttga
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