Pannonibacter phragmitetus: APZ00_03300
Help
Entry
APZ00_03300 CDS
T04214
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pphr
Pannonibacter phragmitetus
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphr03019
]
APZ00_03300
Enzymes [BR:
pphr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
APZ00_03300
Messenger RNA biogenesis [BR:
pphr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
APZ00_03300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_30
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALV26215
UniProt:
A0A0U3MPV4
LinkDB
All DBs
Position
complement(688084..690570)
Genome browser
AA seq
828 aa
AA seq
DB search
MDTWRSPPLPIDAALPELLAALAAGSNAVLVAEPGAGKTTRVPLALLEAPWRGDGRILLL
EPRRLAARAAARRMAESLGEEVGGTVGYRVRMESRVSARTRIEVITEGVFTRMILDDPEL
TGVACVLFDEFHERSLEGDLGLALALDVQGALRDDLRLVPMSATLDAASVARLLGGAPVI
ESKGRSFPVETRYLGRKAEERIEPQVVRAVRKALAEEHGSLLVFLPGQGEIRRVAEALQG
QVPATVRIAPLYGALDGKAQDAAIRPAKEGERKVVLATSIAQTSLTIEGVRTVIDSGLSR
VPRYEPQTGLTRLETVRVSRATADQRRGRAGRTEPGVCYRLWDEAQTQALMPAERPQILE
ADLSSLVLDLAAWGTADPATLSFPDAPPSGAWAEARSLLAQLHALDTEGRLTPHGQRLAR
LPIEPRLAHMIVEAEALGLGRLAGEVAAILSEPGLGGMDVDLRERVRRLRRDNDPRSRDA
RALAARWQKMAAEGGAKTGQDSDGGAPELAGEVLALAFPERVAQGRGQRGRFRLANGRGA
ELPEEHALAGEPFLAVADIQGKAQSGRIMLAAPLGLEAIETMFAADIAETDDVRLEPSGL
VRARRVVRLGALELASRQIANPDASLVAKALLAEIARRGVARLPWTNDQLRLRARADFVR
AAGAEHLPDLSDAALQETLEDWLLPYMAGFTRVSDVDAACLGNALSGLLGYGGAAEIDRL
APSHFTAPTGSHVPIDYGAESGPSISIRVQELFGLARHPSVADGRIPLTLELLSPAHRPI
QVTRDLPGFWAGSWADVKTEMKGRYPRHPWPDDPASAEATRRAKPRGT
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
gtggacacctggcggtcaccgcccctgccgattgatgcggcgctgccggagttgctggcg
gcgcttgcggcgggcagcaatgcggtgctggtggcagagcctggtgcgggcaagaccacc
cgtgtgccgctggcgctgctcgaggccccctggcgcggcgatggccgcattctgctgctg
gagccgcgccgtcttgccgcccgtgccgctgcccggcgtatggccgaaagccttggcgag
gaggtgggcggcaccgttggctaccgggtgcgcatggaaagccgcgtcagcgcccgcacc
cgcatcgaggtgatcaccgagggcgtctttacccgcatgattctggatgacccggaactc
accggcgtcgcctgcgtgctgtttgacgagtttcatgagcgctcgctcgaaggtgacctc
ggtcttgcgctggcgctcgatgtgcagggggccttgcgtgatgacctgagactggtgccc
atgtcggcgacgctggatgccgccagcgtcgcaaggctgctcggcggtgcgccggtcatc
gaaagcaagggccgcagcttccccgttgaaacccgttatctcggccgcaaggcggaagag
cggatcgagccgcaggtggtgcgggccgtgcgcaaggcgctggcggaagagcatggctcg
ctgctggtgttcctgcccggacagggcgaaatccgccgggtggccgaggcgctgcagggc
caggtgcctgccactgtgcgcatcgccccgctttatggtgcgctggacggcaaggcgcag
gatgccgccatccgcccggcgaaggagggcgagcgcaaggtggtgctggccacctccatc
gcccagacatcgctcaccatcgaaggcgtgcggacggtcatcgacagcggcctctcccgc
gtgccgcgctatgagccgcagacggggctgacgcggctggaaaccgtgcgcgtgtcccgg
gccacggcagaccagcgccggggccgtgcgggccggacggagcccggcgtgtgctaccgg
ctttgggacgaagcgcagacacaggcgctgatgccggccgaacggccgcagattctggaa
gccgatctttcctcgctggtgctggatctggcggcctggggcacggcggatccggccacc
ctgtcctttcccgatgccccgccctccggcgcctgggcggaagcgcgcagcctgctggcg
cagcttcatgcgctcgacaccgaaggccgcctgacgccgcatggccagcgtcttgcgcgc
ctgcccatcgagccgcgccttgcgcatatgatcgtggaagcggaagcgctgggtcttgga
cggctggcgggcgaggtggcggcgatcctgtccgagcccggccttggcggcatggacgtg
gacctgcgcgagagggtgagacgcctgcgccgggacaatgatccgcgcagccgcgatgcc
cgcgcccttgcggcccgctggcagaagatggcagccgaaggcggcgcgaagaccgggcag
gacagcgatggcggcgccccggaactggccggtgaagtgctggcgctggccttccccgaa
cgggtggcgcaaggccgcggccagcgcggccgcttccgccttgccaacgggcgcggggcg
gagctgccggaagaacatgcgctggcgggcgagccctttctggctgtcgccgacattcag
ggcaaggcccagtcgggccggatcatgctggcagcgccccttgggcttgaagccatcgag
acgatgtttgccgctgatatcgcggaaaccgatgacgtgcggctggagccctccggtctg
gtgcgggcgcgtcgtgtggtccggctgggggcgctggaactggcctcccggcagatcgcc
aacccggatgcatcgctggtggccaaggcgctgctggcggaaattgcccggcgcggtgtg
gcacggctgccctggaccaatgatcagctgcgcctgcgcgcccgtgccgacttcgtgcgg
gccgcaggggcagagcatctgccggacctctccgacgccgcccttcaggagacgctggaa
gactggctgctgccctatatggcgggcttcacccgcgtttcggatgtggatgccgcctgc
ctcggcaatgcgctctccggtttgctgggctatggcggcgctgcggagattgaccggctg
gcgccatcgcatttcaccgcacccacaggctcgcatgtgcccatcgattacggcgcagaa
agcggcccgtccatttccatccgcgtgcaggagctgttcggtctcgcccggcatccttcc
gtcgccgatggccgcattccgctgacgctggagcttctgtcgcctgcccaccggcccatc
caggtcacgcgggacctgccgggcttctgggcaggctcctgggcggatgtgaagacggag
atgaagggccgctatccgcgccacccctggccggatgaccctgcctctgcagaggcgaca
agacgcgccaaaccacgtggaacgtaa
DBGET
integrated database retrieval system
