Pseudomonas putida ND6: YSA_10746
Help
Entry
YSA_10746 CDS
T02170
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YSA_10746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_10746
Enzymes [BR:
ppi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YSA_10746
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
YSA_10746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFK72594
UniProt:
I3V4C3
LinkDB
All DBs
Position
complement(5750607..5753108)
Genome browser
AA seq
833 aa
AA seq
DB search
MAKPLQEYARKRDFNATPEPSGERKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YVKGKLRFRLQGEKLAGVWNLFRTHLAGKKEQWMLVKSHDAQARSETEYSIVEALPDSVL
SERTLVPRKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQ
ALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQHRRDTLRQLLEHNHSDFIKYSADFD
EPVESLLDSACRLKLEGLIGKRADSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSG
FGALLLALHDNERGELRYAGKVGTGFNTTTLASIHTRLKPLEIASPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRNKQAKAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLHIPNVLSYEKAEAGQAAMVINRPDTLLGAVQMNTLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLALTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHERLAEVDDPWADMGKVRQSITARIRKQLGLE
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccttgcaggaatatgcgcgcaagcgcgacttcaacgctacacccgagccc
agcggcgaacgcaaacgtggcaagcgggctcatgcgctgcagttctgcatccagaaacac
gacgccagtcacctgcactacgacttccgcctcgagctcgacggcaccctgaaaagctgg
gcgatccccaaaggcccatcgctggaccccaaggtgcgccgcctggcagtgcatgtggag
gaccatccgttggactacgccgatttcgagggccatatccctgaaggccactatggtgca
ggcgatgtgatcgtctgggaccgcggtatctgggagcctgaaggcgatgcccatgaagcc
tatgtcaaaggcaagctgcgtttccgcctgcaaggcgagaagctagccggcgtgtggaac
ctgtttcgcacccacctggccggcaagaaagaacaatggatgctggtcaagtcgcacgac
gcccaggcgcgcagcgaaaccgagtacagcattgtcgaggccctgcccgacagcgtgctc
agcgagcgcacgctggtgccacgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgacaaagttcaggctgcccccttgccagcacagctacagccacag
ctggcaacgttggtggattctccacccagcggcgactggcgctacgaagtcaagttcgat
ggctaccgtatcctggcccgaatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccggcaggtggctgccctgcgcgcgctcggtatcgac
tcggcctggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaatgccttcgataccgagcacgacgaacgcatcacctattacctgttcgac
ctgccatttctgggcggtcaggacctgcgacagctaccgctgcagcaccgccgcgatacg
ttgcgccaactgcttgagcacaaccattccgacttcatcaagtattccgccgacttcgac
gaacctgtcgaatcgctactcgacagtgcctgccggctgaagctggaaggcctgatcggc
aagcgtgctgacagtgtttacagcggccgccgtagcccagactggatcaagctcaagtgc
aagcaacgccaggaattcgtgatcgtcggctacaccgaccccaaaggcagtcgcagcggc
ttcggtgccctgctgctggccctgcacgacaatgagcgtggcgagctgcgctatgccggc
aaggttggtaccggcttcaacaccacgacactggccagcatccacacgcggctcaagccc
ttggaaatcgccagccctgccctgccctcgccacctgccggagccgaagcgcgtggtgtg
cactggctgcggccgcagttgttggctgaagtcgcctttgcccagatgacccgtgacggc
atcgtgcggcattcggtgttccacggcctgcgcgatgacaaggcggccaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgcaacaagcaggccaaggcgtct
gagaacctgggtgaactgcggctgacccaccccgaccgggtcatcgaccccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccacag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcctgggtggcgagctgttc
ttccagaaaaacgcgggccagctgcacatacccaacgtactcagttatgaaaaggccgag
gcaggccaggcggcgatggtcattaatcgcccggacacgctgctgggcgcggtgcagatg
aatacgctggagctgcacacctggaacgccacggacaaggatttcgacaagccggaccgt
tttgtcctcgacctggaccctgatcctgcgctgccatggaaggcgatggtggaggcgacc
caactggccctcaccctgctggatgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccggcgtgccggctgggacgaagtcaag
gacttcagccacgccatcgtcaattacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcatcttcatcgactacctgcgcaatggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcgtctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatacgcaagcagctagggctcgaatga
DBGET
integrated database retrieval system
