Pseudomonas plecoglossicida: RK21_01966
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Entry
RK21_01966 CDS
T03646
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RK21_01966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_01966
Enzymes [BR:
ppj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RK21_01966
DNA repair and recombination proteins [BR:
ppj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RK21_01966
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJG13474
UniProt:
A0A099N1D9
LinkDB
All DBs
Position
complement(2111777..2114269)
Genome browser
AA seq
830 aa
AA seq
DB search
MAKPLQEYARKRDFNATPEPSGKRSRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLQGEKLGGVWNLFRTHLAGKKEQWMLVKSHDSQARSEADYSIVDAQPDSVL
SDRTLVPRKPTAKKAAAPRRKAASKGRKVPLPAQLQPQLATLVDSPPSGDWRYEVKFDGY
RILARIDGDDVRLFTRNGHDWSGKMPRQVAALRALGLDSAWLDGEVVVAGENGAADFQAL
QNAFDTEHDEHITYYLFDLPFLGSQDLRQLPLQDRRDTLQRLLEHNESDVLKYSADFDQP
VESLLDSACRLQLEGLIGKRVDSPYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFG
ALLLALHDNDSGELRYAGKVGTGFSTTTLASIHARLKPLETAKPALPKPPTGAEARGVHW
LKPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKPATAIDLERSMPAKTLPKRKQAKAPEAL
GELRLTHPERVVDATSGVTKREVAEYYAAVSQWILPQLKNRPVALVRAPDGLAGELFFQK
NAGQLHLPNVLSYDKAEAGQAAMVINRADTLIGAVQMNMLELHTWNATDKDFDKPDRFVL
DLDPDPALPWKAMLEATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRASWDEVKAFS
HGIVDYLARLFPDRLSAVSGPKNRIGRIFIDYLRNGKGATTACAYTLRAREGLPVSVPIW
REELPQLKGANQWNIGNVLERLGDVDDPWADYGKTRQSITVGMRKQLGLA
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggaatatgcgcgcaagcgcgacttcaatgccacgcccgagccc
agcggcaagcgcagccgtggcaagcgggcccacgcgctgcagttctgcatccagaagcac
gatgccagccacctgcactacgacttccgcctggaactcgatggcacgctgaaaagctgg
gccatccccaaagggccgtcgctggaccccaaggtgcgccgcctggccgtgcacgtggag
gaccacccgctggactacgccgacttcgaaggccatatccccgaagggcattacggcgcg
ggcgacgtgatcgtctgggaccggggcatctgggagcccgaaggtgatgcgcatgaggcc
tatgccaagggcaaactgcgtttccgcctgcaaggcgaaaagctcggcggtgtatggaac
ctgttccgcacccacctggccggcaagaaggagcagtggatgctggtcaagtcgcacgac
agccaggcgcgcagcgaagccgactacagcatcgtcgacgcccagcccgacagcgtgctc
agcgaccgcacgctggtgccgcgcaagccgacagcaaaaaaggccgccgcgccacgtcgc
aaagccgccagcaaaggccggaaggtgccgttgccggcgcagctgcagccacaactggcg
accttggtcgactccccgcccagtggcgactggcgctacgaggtcaagttcgacggttac
cgcatccttgcccgcatcgacggtgatgacgtgcgcctgttcacccgcaatggccatgac
tggagcggcaagatgcccaggcaggttgccgctttgcgcgcgctgggcctcgattcggcc
tggctcgatggcgaggtggtggtggctggcgaaaacggcgcggcggacttccaggcgttg
cagaacgctttcgacaccgagcatgacgagcacatcacctattacctgttcgacctgccc
ttcctgggcagccaggacctgcgccagttaccgctgcaggaccggcgcgacaccttgcag
cgcttgctggaacacaacgaatcggacgtactcaagtactccgccgactttgaccagccg
gtcgaatccctgctcgacagcgcctgccggctgcaactcgaaggcctgatcggcaagcgc
gtcgacagcccctacagcggccgccgcagccccgactggatcaagctcaagtgcaagcag
cgccaggagttcgtaatcgtcggctacaccgaccccaaaggcagccgcagcggctttggt
gccctgctgctggccttgcacgacaacgacagcggcgagttgcgctatgccggcaaggtc
ggcaccggcttcagtacaaccacgctggccagcatccatgcccggctcaaaccattggaa
accgccaagccggccctgcccaaaccgcccaccggggccgaagcccggggcgtgcattgg
ctgaaaccgcaactgctggccgaagtcgcctatgcccagatgacccgtgacggcatcgtg
cgccactcggtgttccacggcctgcgcgatgacaaaccggctaccgccatcgacctggag
cgcagcatgcccgccaagaccctgcccaagcgcaagcaagccaaggcccccgaggctttg
ggcgagctgcgcctgacccaccccgagcgggtggtcgacgccaccagcggcgttaccaag
cgcgaggtcgccgagtactacgccgcagtcagccaatggatattgccccagctcaagaat
cgcccggtggcgctggtacgtgcaccagacgggctggccggggagctgttcttccagaag
aacgccggccagttgcatctgcccaacgtgctcagctatgacaaggccgaggccggccag
gcggcgatggtcatcaatcgcgccgacaccttgatcggcgcagtgcagatgaacatgctc
gaactgcacacctggaacgccacggacaaagacttcgacaagcccgaccgcttcgtcctc
gaccttgacccggacccggcactgccgtggaaggccatgctggaagccacccaactggcc
ctcaccttgctggatgaactgggcctgaaggtgtttctcaagaccagtggcggcaaaggc
atgcacctggtagtgcccctgacccggcgtgccagctgggatgaagtcaaggcattcagc
cacggcatcgtcgattacctggccaggttgttccccgacaggctcagtgccgtgtccggg
cccaaaaatcgcatcgggcgcatcttcatcgactacctgcgcaacggcaagggggctacc
accgcctgcgcgtataccctgcgcgcccgcgaaggcctgccggtatccgtgccgatctgg
cgcgaggaactgccgcaactcaagggcgccaaccagtggaacatcggcaatgtgcttgaa
cgactgggcgatgtcgacgacccctgggccgattatggcaagaccaggcaatcgatcacc
gtgggcatgcgcaagcagctggggctggcctga
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